FC921407

Overview
NameFC921407
Unique NameFC921407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15085 contig Ccv1_Contig15085:11..463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP_ARATH (Putative selenium-binding protein OS=Arabidopsis thaliana GN=At4g14030 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.407e-45
Identity = 86/124 (69.35%), Postives = 100/124 (80.65%), Query Frame = 3
Query:   90 MATDTAVAEHRSSNNG--HGCCAKG-PGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            MAT+T V    + +NG   GCC  G PGYA PL AMSGP EKL+YVT +YTGTG +KPDYLATVD DPSS SYS VIHRLP+P++GDELHHSGWNSCSSC+GD+S  RR+LVLP L+SGRIY +
Sbjct:    1 MATETEVVAPVTVSNGGSKGCCKYGGPGYATPLAAMSGPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIHRLPMPFVGDELHHSGWNSCSSCHGDASVDRRYLVLPSLISGRIYAI 124          
BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP1A_XENLA (Selenium-binding protein 1-A OS=Xenopus laevis GN=selenbp1-A PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 3.059e-38
Identity = 69/103 (66.99%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  144 CCAKGPGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            C + GPGY  PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S SYS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S RIY+V
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPSYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRIYVV 106          
BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP1B_XENLA (Selenium-binding protein 1-B OS=Xenopus laevis GN=selenbp1-B PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 8.901e-38
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  144 CCAKGPGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            C + GPGY  PLDAM GPRE+++Y+ C+Y  TG  KPDYLATVD DP S +YS+VIHRLP+P + DELHHSGWN+CSSCYGDSS  R  L+LP L+S R+Y+V
Sbjct:    4 CGSCGPGYKSPLDAMKGPREEIVYLPCIYRSTGINKPDYLATVDVDPKSPTYSQVIHRLPMPNVNDELHHSGWNTCSSCYGDSSKVRNKLILPCLISSRVYVV 106          
BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP1_MOUSE (Selenium-binding protein 1 OS=Mus musculus GN=Selenbp1 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.983e-37
Identity = 66/103 (64.08%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  144 CCAKGPGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            C   GPGY+ PL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIY+V
Sbjct:    5 CTKCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVV 107          
BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 3.382e-37
Identity = 66/103 (64.08%), Postives = 81/103 (78.64%), Query Frame = 3
Query:  144 CCAKGPGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            C   GPGY  PL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+PY+ DELHHSGWN+CSSC+GDS+  R  L+LP L+S RIY+V
Sbjct:    5 CTKCGPGYPTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDELHHSGWNTCSSCFGDSTKSRNKLILPGLISSRIYVV 107          
BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP1_XENTR (Selenium-binding protein 1 OS=Xenopus tropicalis GN=selenbp1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 9.841e-37
Identity = 67/103 (65.05%), Postives = 80/103 (77.67%), Query Frame = 3
Query:  144 CCAKGPGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            C + GPGY  PLDAM GPRE++LY+ C+Y  TG  KPDYLATVD +P S  YS+VIHRLP+P   DELHHSGWN+CSSCYGD+S  R  L+LP L+S RIY+V
Sbjct:    4 CGSCGPGYKTPLDAMKGPREEILYLPCIYRNTGINKPDYLATVDVNPKSPKYSQVIHRLPMPNTNDELHHSGWNTCSSCYGDASKVRNKLILPCLISSRIYVV 106          
BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP1_RAT (Selenium-binding protein 1 OS=Rattus norvegicus GN=Selenbp1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.679e-36
Identity = 65/103 (63.11%), Postives = 82/103 (79.61%), Query Frame = 3
Query:  144 CCAKGPGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            C   GPGYA PL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  YS+VIHRLP+P++ DELHHSGWN+CSSC+GDS+  R  L+LP ++S RIY+V
Sbjct:    5 CTKCGPGYATPLEAMKGPREEIVYLPCIYRNTGIEAPDYLATVDVDPKSPHYSQVIHRLPMPHLKDELHHSGWNTCSSCFGDSTKSRDKLILPSIISSRIYVV 107          
BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP1_PONAB (Selenium-binding protein 1 OS=Pongo abelii GN=SELENBP1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.421e-35
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 3
Query:  144 CCAKGPGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            C   GPGY+ PL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLP L+S RIY+V
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVV 107          
BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP1_HUMAN (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.421e-35
Identity = 65/103 (63.11%), Postives = 80/103 (77.67%), Query Frame = 3
Query:  144 CCAKGPGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            C   GPGY+ PL+AM GPRE+++Y+ C+Y  TG E PDYLATVD DP S  Y +VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  LVLP L+S RIY+V
Sbjct:    5 CGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVV 107          
BLAST of FC921407 vs. ExPASy Swiss-Prot
Match: SBP1_BOVIN (Selenium-binding protein 1 OS=Bos taurus GN=SELENBP1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.166e-35
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 3
Query:  147 CAK-GPGYAPPLDAMSGPREKLLYVTCLYTGTGREKPDYLATVDADPSSSSYSKVIHRLPVPYIGDELHHSGWNSCSSCYGDSSAXRRFLVLPFLVSGRIYIV 452
            C K GPGY  PL+AM GPRE+L+Y+ C+Y  TG E PDYLATVD +P S  YS+VIHRLP+P + DELHHSGWN+CSSC+GDS+  R  L+LP L+S R+Y+V
Sbjct:    5 CGKCGPGYPSPLEAMKGPREELVYLPCIYRNTGTEAPDYLATVDVNPKSPQYSQVIHRLPMPNLKDELHHSGWNTCSSCFGDSTKSRTKLLLPSLISSRVYVV 107          
The following BLAST results are available for this feature:
BLAST of FC921407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP_ARATH4.407e-4569.35Putative selenium-binding protein OS=Arabidopsis t... [more]
SBP1A_XENLA3.059e-3866.99Selenium-binding protein 1-A OS=Xenopus laevis GN=... [more]
SBP1B_XENLA8.901e-3865.05Selenium-binding protein 1-B OS=Xenopus laevis GN=... [more]
SBP1_MOUSE1.983e-3764.08Selenium-binding protein 1 OS=Mus musculus GN=Sele... [more]
SBP2_MOUSE3.382e-3764.08Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]
SBP1_XENTR9.841e-3765.05Selenium-binding protein 1 OS=Xenopus tropicalis G... [more]
SBP1_RAT1.679e-3663.11Selenium-binding protein 1 OS=Rattus norvegicus GN... [more]
SBP1_PONAB1.421e-3563.11Selenium-binding protein 1 OS=Pongo abelii GN=SELE... [more]
SBP1_HUMAN1.421e-3563.11Selenium-binding protein 1 OS=Homo sapiens GN=SELE... [more]
SBP1_BOVIN3.166e-3563.11Selenium-binding protein 1 OS=Bos taurus GN=SELENB... [more]

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Properties
Property NameValue
Genbank descriptionC32104F04EF RVDevelopN Citrus clementina cDNA clone C32104F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921407 ID=FC921407; Name=FC921407; organism=Citrus clementina; type=EST; length=452bp
GGATTGCGTTCTTATCATCCATTCGCTTCCTATCTTGATCTTTCTTCAAA
GTCTTTGTGTTGTTCTGTCTGTGTTTTTTCTTGTAAGAAATGGCAACTGA
TACTGCGGTGGCTGAACACCGGTCGAGCAATAATGGCCATGGTTGCTGCG
CAAAAGGGCCTGGGTATGCACCCCCACTCGATGCCATGTCTGGTCCTAGA
GAGAAACTTCTCTATGTCACTTGTCTTTACACTGGTACTGGAAGAGAGAA
GCCTGATTACCTAGCGACAGTGGATGCGGATCCTAGCTCTTCTTCTTATT
CAAAAGTTATTCATCGGCTCCCCGTGCCATACATTGGCGATGAACTACAT
CATTCGGGATGGAATTCATGTAGCTCATGCTATGGAGATTCATCTGCTNC
ACGGCGTTTTCTTGTCTTGCCCTTCTTGGTATCTGGTCGTATATACATAG
TT
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