FC921468

Overview
NameFC921468
Unique NameFC921468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14315 contig Ccv1_Contig14315:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR89_DICDI (WD repeat-containing protein 89 homolog OS=Dictyostelium discoideum GN=wdr89 PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.322e-19
Identity = 70/205 (34.15%), Postives = 100/205 (48.78%), Query Frame = 1
Query:  103 DNVNSIKRFGLKNSI---QTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQ-EIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLLESVIMWERPXG 705
            D + S   F   NSI     + GDD  + +      +L+A + S  ++K+Y            GH   +N+  F      + L SCSSD T++ WDT++     S T   Q EIF     G    +LA G GS +  ++   KK +   + SH EDVT+V F P ++NK+VS SVDGLIC +D     +DDD +  VI  E   G
Sbjct:    2 DQLISQLNFKSHNSIIHSVDSIGDDTCYVLDLSVTPNLLAAAGSNYLIKIYDRSNNTILNVLSGHKDAINETKFI--ENTNTLLSCSSDKTVKIWDTKTGQ--CSQTINQQGEIFSIDLNGD---ILAMGVGSMVVLYNLSTKKMIRKFDCSHTEDVTRVRFHPIDKNKLVSCSVDGLICMYDL-EQADDDDAIVHVINAEDSIG 198          
BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR89_RAT (WD repeat-containing protein 89 OS=Rattus norvegicus GN=Wdr89 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 54/177 (30.51%), Postives = 82/177 (46.33%), Query Frame = 1
Query:  184 VPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWS-VTAGSQEIFCFSFG-GSTDYLLAAGC-----GSQIQFWDWRNKKQ-------VACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL 672
            VP     L+AV  S   +++Y   T     E  G    +N + F+       ++S S+DGT++ WD R   E  + +  G       SF     D+++ AG       + + FWD R   Q       +    E+H++D+TQV F P+N N VVS S DGL+  FD   D  +D L+
Sbjct:   35 VPAEKGGLVAVLCSNGSIRIYDKETLNLLREFSGSPGLLNGVRFANSCDN--VYSASTDGTVKCWDARLASEKPAQLFKGYPSNIFISFDVNCKDHIICAGAEKVEDDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDLSVDNEEDALV 209          
BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR89_BOVIN (WD repeat-containing protein 89 OS=Bos taurus GN=WDR89 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 62/204 (30.39%), Postives = 92/204 (45.10%), Query Frame = 1
Query:  106 NVNSIKRFGLKNSIQTNFGDDYVFEIVPKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTR--SFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWR--------NKKQVACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL 672
            N+N +KR           G D   + V     SL+AV  S   ++++         E +G+   +N + F+  S   V  SC+ DGT++ WD R  S   V         IF      S D+++ AG       + + FWD R         K+ +    E+H++D+TQV F P+N N VVS S DGL+  FD   D  DD L+
Sbjct:   10 NLNIVKRSSETKEPTYLLGID-TSKTVQTEKGSLVAVLCSNGSIRIHDKERLNVIREFRGYPG-LNGVKFAN-SHDSVYSSCT-DGTVKCWDARLASGKPVQLFKGYPSNIFISFDISSNDHVICAGTEKVDDDALLVFWDARINSQDLSTTKEPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDGLVNVFDISADNEDDALV 209          
BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR89_MOUSE (WD repeat-containing protein 89 OS=Mus musculus GN=Wdr89 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.175e-13
Identity = 52/170 (30.59%), Postives = 80/170 (47.06%), Query Frame = 1
Query:  205 LMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEV-WSVTAGSQEIFCFSFG-GSTDYLLAAGC-----GSQIQFWDWRNKKQ-------VACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL 672
            L+AV  S   +++Y   T     E  G    ++ +SF+       ++S S+DGT++ WD R   E    +  G       SF     D+++ AG       + + FWD R   Q       +    E+H++D+TQV F P+N N VVS S DGL+  FD   D  +D L+
Sbjct:   42 LVAVLCSNGSIRIYDKETLHLLREFGGSPGLLSGVSFANSCDS--VYSASTDGTVKCWDARGASEKPVQLFKGYPSCSFISFDVNCKDHVICAGAEKVDEDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNLVVSGSTDGLVNVFDLSADKEEDALV 209          
BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR89_HUMAN (WD repeat-containing protein 89 OS=Homo sapiens GN=WDR89 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 51/172 (29.65%), Postives = 78/172 (45.35%), Query Frame = 1
Query:  202 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWR--------NKKQVACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL 672
            +L+AV  S   +++Y         E  G+   +N + F+       ++S  +DGT++ WD R   E  V         IF        D+++ AG       + + FWD R         K  +    E+H++DVTQV F P+N N VVS S DGL+  FD   D  +D L+
Sbjct:   41 NLVAVLCSNGSIRIYDKERLNVLREFSGYPGLLNGVRFANSCDS--VYSACTDGTVKCWDARVAREKPVQLFKGYPSNIFISFDINCNDHIICAGTEKVDDDALLVFWDARMNSQNLSTTKDSLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALV 210          
BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR89_PONAB (WD repeat-containing protein 89 OS=Pongo abelii GN=WDR89 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 51/172 (29.65%), Postives = 78/172 (45.35%), Query Frame = 1
Query:  202 SLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHE--VWSVTAGSQEIFCFSFGGSTDYLLAAGC-----GSQIQFWDWRNKKQ--------VACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDTGGDINDDDLL 672
            +L+AV  S   +++Y         E  G+   +N + F+       ++S  +DGT++ WD R   E  V         IF        D+++ AG       + + FWD R   Q        +    E+H++DVTQV F P+N N VVS S DGL+  FD   D  +D L+
Sbjct:   41 NLVAVLCSNGSIRIYDKERLSVLREFSGYPGLLNGVRFANSCDS--VYSACTDGTVKCWDARVAREKPVQLFKGYPSNIFISFDINCNDHIICAGTEKVDDDALLVFWDARMNSQDLSTTKDPLGAYSETHSDDVTQVRFHPSNPNMVVSGSSDGLVNVFDINIDNEEDALV 210          
BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 39/152 (25.66%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  187 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDT 642
            P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +H++ V+ VHF   + + +VS+S DGL   +DT
Sbjct:   55 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT 200          
BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 39/152 (25.66%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  187 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDT 642
            P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +H++ V+ VHF   + + +VS+S DGL   +DT
Sbjct:   55 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT 200          
BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 39/152 (25.66%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  187 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDT 642
            P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +H++ V+ VHF   + + +VS+S DGL   +DT
Sbjct:   55 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT 200          
BLAST of FC921468 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 39/152 (25.66%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  187 PKNDWSLMAVSLSTNVVKLYSPVTGQYSGECKGHSSTVNQISFSGPSTPHVLHSCSSDGTIRAWDTRSFHEVWSVTAGSQEIFCFSFGGSTDYLLAAGCGSQIQFWDWRNKKQVACLEESHAEDVTQVHFVPNNQNKVVSASVDGLICTFDT 642
            P  +W  +A S +  ++K++    G++     GH   ++ +++S  S  ++L S S D T++ WD  S   + ++   S  +FC +F   ++ +++      ++ WD +  K +  L  +H++ V+ VHF   + + +VS+S DGL   +DT
Sbjct:   55 PNGEW--LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS--NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHF-NRDGSLIVSSSYDGLCRIWDT 200          
The following BLAST results are available for this feature:
BLAST of FC921468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
WDR89_DICDI1.322e-1934.15WD repeat-containing protein 89 homolog OS=Dictyos... [more]
WDR89_RAT2.414e-1330.51WD repeat-containing protein 89 OS=Rattus norvegic... [more]
WDR89_BOVIN4.118e-1330.39WD repeat-containing protein 89 OS=Bos taurus GN=W... [more]
WDR89_MOUSE9.175e-1330.59WD repeat-containing protein 89 OS=Mus musculus GN... [more]
WDR89_HUMAN2.669e-1229.65WD repeat-containing protein 89 OS=Homo sapiens GN... [more]
WDR89_PONAB3.486e-1229.65WD repeat-containing protein 89 OS=Pongo abelii GN... [more]
WDR5_XENTR6.575e-1125.66WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT6.575e-1125.66WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE6.575e-1125.66WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN6.575e-1125.66WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32105C09EF RVDevelopN Citrus clementina cDNA clone C32105C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921468 ID=FC921468; Name=FC921468; organism=Citrus clementina; type=EST; length=706bp
GACACACGAAAGGAAAGGCGGGAGCAACAACTGGAAGAAGAAGGCACAGA
GATGGAGATGGAAGCGGAAGAATCTCAATCTCAACCTAAATCCCAGAGCT
GTGATAATGTAAACTCAATCAAGAGATTTGGGCTCAAAAACTCAATTCAA
ACCAACTTCGGCGACGACTATGTTTTTGAAATCGTTCCTAAGAATGACTG
GTCATTAATGGCGGTGTCGCTGTCAACAAATGTAGTGAAACTGTACTCAC
CAGTGACCGGTCAGTACTCTGGAGAGTGCAAGGGTCATTCTTCAACTGTA
AACCAAATATCTTTCTCAGGTCCATCAACCCCACACGTTCTGCATTCATG
CTCTTCTGATGGCACCATCAGAGCTTGGGACACCAGATCATTCCATGAGG
TATGGAGTGTAACTGCTGGTTCTCAGGAGATCTTCTGTTTTTCTTTTGGA
GGATCAACTGATTATCTTCTTGCTGCTGGATGTGGTTCACAGATACAGTT
CTGGGACTGGAGGAACAAGAAGCAAGTTGCTTGTTTGGAGGAGTCTCATG
CTGAGGATGTCACCCAGGTTCACTTTGTGCCTAACAATCAAAATAAGGTT
GTTTCTGCTTCTGTGGATGGATTGATTTGTACATTTGATACTGGTGGAGA
TATCAATGATGATGATCTTCTGGAATCTGTGATCATGTGGGAACGTCCGN
TTGGGA
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