FC921524

Overview
NameFC921524
Unique NameFC921524
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15495 contig Ccv1_Contig15495:100..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.785e-25
Identity = 64/191 (33.51%), Postives = 101/191 (52.88%), Query Frame = 3
Query:   12 LQYLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQG---DRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575
            L+YLE L+   P+L +  N + D Y+ KLWHQLT ++E  +          L   Y NFI DFE K+  L L    + V+RQ+   ++   ++E + +K++     + +   +     IA   L  G     ++CKK LE  K  L  +T +D  VY+++Y VS+ YH    + +EFYK AL+YL+Y  +E
Sbjct:    7 LEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFIRDFENKLRPLSLVEICIAVARQFDTDESR-KFIETISQKVK-----KDKSAYILTLSYIANMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKNALMYLSYCKLE 191          
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.157e-24
Identity = 63/186 (33.87%), Postives = 106/186 (56.99%), Query Frame = 3
Query:   18 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+S+LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L ++  +  SV++ +Y +SS+Y++     A +YK AL +L    ++
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLSNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIK 186          
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.511e-24
Identity = 62/186 (33.33%), Postives = 107/186 (57.53%), Query Frame = 3
Query:   18 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L    ++
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIK 186          
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.511e-24
Identity = 62/186 (33.33%), Postives = 107/186 (57.53%), Query Frame = 3
Query:   18 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L    ++
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIK 186          
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.366e-24
Identity = 62/186 (33.33%), Postives = 107/186 (57.53%), Query Frame = 3
Query:   18 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +ED +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L    ++
Sbjct:    7 FLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIK 186          
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.794e-24
Identity = 62/186 (33.33%), Postives = 107/186 (57.53%), Query Frame = 3
Query:   18 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + V RQ  +   A+++LE   EK++++     +E ++  K  I   KL  GD +  K+ +E+ +  L+++  +  SV++ +Y +SS+Y++     A +YK AL +L    V+
Sbjct:    7 FLQQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPTVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEEVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCIDVK 186          
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14
Identity = 52/189 (27.51%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   21 LESLRND-HPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKE--------EPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 560
            L +LR +  P L   +      Y++KLW QL+  L +F   A  ++    ++LY NF++ F  KIN L +  + +   +   +   ++ YL+ +  + +  + +++         + IL I  +IA   L + D  + + LL+D + TLD    I   +  ++Y  +SQY KF  +F  FY  +LLYL+
Sbjct:   11 LSTLRMEADPSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDA--KSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197          
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.387e-14
Identity = 49/173 (28.32%), Postives = 89/173 (51.45%), Query Frame = 3
Query:   51 LGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDAL---IQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 560
            L + Y  + DLY++KLW QLT  L  F     F   + +   + LY NF+  F   IN LK  +  +         +A +  L  ++ +L   +E++ ++  +Y  + IA  KL  G   E ++LL      +D +  ++  ++++YY VS+ Y+K   ++A++Y+  LLYL+
Sbjct:   24 LQQSYILMEDLYERKLWKQLTDALIVF-----FDTPETVPLRLPLYTNFVNSFRPNINQLKAVYMGLKAFESCSNDEA-LRNLNQIVNEL---DEEKYKDAYVYSIVAIARIKLISGKLDEARELLVKASKIIDHIDYVESLIHSSYYSVSADYYKAKADYAQYYRHCLLYLS 187          
The following BLAST results are available for this feature:
BLAST of FC921524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSD13_DICDI1.785e-2533.5126S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_BOVIN1.157e-2433.8726S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_RAT1.511e-2433.3326S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_MOUSE1.511e-2433.3326S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_HUMAN3.366e-2433.3326S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_CHICK9.794e-2433.3326S proteasome non-ATPase regulatory subunit 13 OS... [more]
RPN9_YEAST3.158e-1427.5126S proteasome regulatory subunit RPN9 OS=Saccharo... [more]
RPN9_SCHPO5.387e-1428.32Probable 26S proteasome regulatory subunit rpn9 OS... [more]
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Properties
Property NameValue
Genbank descriptionC32106A02EF RVDevelopN Citrus clementina cDNA clone C32106A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921524 ID=FC921524; Name=FC921524; organism=Citrus clementina; type=EST; length=648bp
CCATGGCAGCTCTTCAGTACTTGGAATCTTTGCGAAACGACCATCCGGAG
CTGGGCGAGTGGTACAATGCTTTGGCAGATCTGTACCAGAAGAAGCTGTG
GCACCAGCTCACCCTCAAGCTCGAACAGTTCGTCGCTCACGCCGTCTTTC
AGGCTGGTGATGCTCTGATTCAGTTGTACCACAACTTCATAACTGATTTT
GAGACAAAGATCAATCTTCTCAAGCTTGCACATTTTGCTGTTATAGTTTC
TCGGCAGTATCCTGAGAAGCAAGCTGCAATTAGTTATCTTGAGGGTGTGA
TTGAAAAACTCCGAGCAACTAATGAGCAGCGTAAAGAAGAGCCAATCCTT
TACATTAAGATGCAAATAGCCATGTTCAAACTTGAGCAAGGAGATAGAAA
GGAGTGCAAAAAACTTCTCGAAGATGGAAAGAGTACACTTGACAGCATGA
CTGACATTGATCCATCTGTGTATGCCAACTATTATTGGGTGTCATCTCAG
TACCATAAATTTCACCAGGAATTTGCAGAGTTCTACAAATGTGCTCTTCT
TTATCTGGCATACACATCTGTGGAGTCTCTCTCAGATTCATTCAAGCTGG
ATTTGGCATTTGATCTCTCCCTTTCTGCACTGCTGGGAGAATACATCT
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