FC921524
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.785e-25 Identity = 64/191 (33.51%), Postives = 101/191 (52.88%), Query Frame = 3 Query: 12 LQYLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQG---DRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575 L+YLE L+ P+L + N + D Y+ KLWHQLT ++E + L Y NFI DFE K+ L L + V+RQ+ ++ ++E + +K++ + + + IA L G ++CKK LE K L +T +D VY+++Y VS+ YH + +EFYK AL+YL+Y +E Sbjct: 7 LEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFIRDFENKLRPLSLVEICIAVARQFDTDESR-KFIETISQKVK-----KDKSAYILTLSYIANMNLRSGVAEQLQDCKKTLELAKEELQGVTGLDTIVYSSFYRVSTDYHMAKSQASEFYKNALMYLSYCKLE 191
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.157e-24 Identity = 63/186 (33.87%), Postives = 106/186 (56.99%), Query Frame = 3 Query: 18 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575 +L+ ++ P ++ L +LY KKLWHQLTL++ FV F GD LI+LY NFI++FE ++N L L + V RQ + A+S+LE EK++++ +E ++ K I KL GD + K+ +ED + L ++ + SV++ +Y +SS+Y++ A +YK AL +L ++ Sbjct: 7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALSFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLSNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIK 186
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.511e-24 Identity = 62/186 (33.33%), Postives = 107/186 (57.53%), Query Frame = 3 Query: 18 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575 +L+ ++ P ++ L +LY KKLWHQLTL++ FV F GD LI+LY NFI++FE ++N L L + V RQ + A+++LE EK++++ +E ++ K I KL GD + K+ +ED + L+++ + SV++ +Y +SS+Y++ A +YK AL +L ++ Sbjct: 7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIK 186
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.511e-24 Identity = 62/186 (33.33%), Postives = 107/186 (57.53%), Query Frame = 3 Query: 18 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575 +L+ ++ P ++ L +LY KKLWHQLTL++ FV F GD LI+LY NFI++FE ++N L L + V RQ + A+++LE EK++++ +E ++ K I KL GD + K+ +ED + L+++ + SV++ +Y +SS+Y++ A +YK AL +L ++ Sbjct: 7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQATKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIK 186
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.366e-24 Identity = 62/186 (33.33%), Postives = 107/186 (57.53%), Query Frame = 3 Query: 18 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575 +L+ ++ P ++ L +LY KKLWHQLTL++ FV F GD LI+LY NFI++FE ++N L L + V RQ + A+++LE EK++++ +E ++ K I KL GD + K+ +ED + L+++ + SV++ +Y +SS+Y++ A +YK AL +L ++ Sbjct: 7 FLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIK 186
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 9.794e-24 Identity = 62/186 (33.33%), Postives = 107/186 (57.53%), Query Frame = 3 Query: 18 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLAYTSVE 575 +L+ ++ P ++ L +LY KKLWHQLTL++ FV F GD LI+LY NFI++FE ++N L L + V RQ + A+++LE EK++++ +E ++ K I KL GD + K+ +E+ + L+++ + SV++ +Y +SS+Y++ A +YK AL +L V+ Sbjct: 7 FLQQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPTVALTFLEKTREKVKSS-----DEAVILCKTAIGALKLNIGDLQVTKETIEEVEEMLNNLPGV-TSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCIDVK 186
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: RPN9_YEAST (26S proteasome regulatory subunit RPN9 OS=Saccharomyces cerevisiae GN=RPN9 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14 Identity = 52/189 (27.51%), Postives = 94/189 (49.74%), Query Frame = 3 Query: 21 LESLRND-HPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKE--------EPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 560 L +LR + P L + Y++KLW QL+ L +F A ++ ++LY NF++ F KIN L + + + + + ++ YL+ + + + + +++ + IL I +IA L + D + + LL+D + TLD I + ++Y +SQY KF +F FY +LLYL+ Sbjct: 11 LSTLRMEADPSLHPLFEQFEKFYEEKLWFQLSESLTKFFDDA--KSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197
BLAST of FC921524 vs. ExPASy Swiss-Prot
Match: RPN9_SCHPO (Probable 26S proteasome regulatory subunit rpn9 OS=Schizosaccharomyces pombe GN=rpn9 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.387e-14 Identity = 49/173 (28.32%), Postives = 89/173 (51.45%), Query Frame = 3 Query: 51 LGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDAL---IQLYHNFITDFETKINLLKLAHFAVIVSRQYPEKQAAISYLEGVIEKLRATNEQRKEEPILYIKMQIAMFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYANYYWVSSQYHKFHQEFAEFYKCALLYLA 560 L + Y + DLY++KLW QLT L F F + + + LY NF+ F IN LK + + +A + L ++ +L +E++ ++ +Y + IA KL G E ++LL +D + ++ ++++YY VS+ Y+K ++A++Y+ LLYL+ Sbjct: 24 LQQSYILMEDLYERKLWKQLTDALIVF-----FDTPETVPLRLPLYTNFVNSFRPNINQLKAVYMGLKAFESCSNDEA-LRNLNQIVNEL---DEEKYKDAYVYSIVAIARIKLISGKLDEARELLVKASKIIDHIDYVESLIHSSYYSVSADYYKAKADYAQYYRHCLLYLS 187 The following BLAST results are available for this feature:
BLAST of FC921524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921524 ID=FC921524; Name=FC921524; organism=Citrus clementina; type=EST; length=648bpback to top |