FC921674

Overview
NameFC921674
Unique NameFC921674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921674_ssr187 microsatellite FC921674_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11452 contig Ccv1_Contig11452:2..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.576e-80
Identity = 124/140 (88.57%), Postives = 130/140 (92.86%), Query Frame = 1
Query:  220 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            MGD  TDAGMDAVQRRLMFEDECILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHP YRESEL++ENALGVRNAAQRKLLDELGI  EDVPVD+F PLGR+LY+
Sbjct:   75 MGDTATDAGMDAVQRRLMFEDECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYK 214          

HSP 2 Score: 62.003 bits (149), Expect = 3.576e-80
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +APSDGKWGEHELDYLLF +RDV+V+PNPD
Sbjct:  214 KAPSDGKWGEHELDYLLFIIRDVNVHPNPD 243          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 3.584e-80
Identity = 125/140 (89.29%), Postives = 131/140 (93.57%), Query Frame = 1
Query:  220 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            MGDA TDAGMDAVQ+RLMFED+CILVDEND VVGH+ KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+ENALG RNAAQRKLLDELGI  EDVPVD+F PLGRILY+
Sbjct:    1 MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYK 140          

HSP 2 Score: 60.8474 bits (146), Expect = 3.584e-80
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +APSDGKWGEHELDYLLF VRDV+V PNPD
Sbjct:  140 KAPSDGKWGEHELDYLLFIVRDVNVNPNPD 169          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 8.675e-79
Identity = 122/136 (89.71%), Postives = 129/136 (94.85%), Query Frame = 1
Query:  232 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            T DAGMDAVQRRLMFEDECILVDE DRVVGH++KYNCHLME IE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI++NALGVRNAAQRKLLDELGI  EDVPVDEFTPLGR+LY+
Sbjct:   55 TKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYK 190          

HSP 2 Score: 60.8474 bits (146), Expect = 8.675e-79
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +APSDGKWGEHELDYLLF VRDV V PNPD
Sbjct:  190 KAPSDGKWGEHELDYLLFIVRDVKVQPNPD 219          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 2.515e-78
Identity = 123/136 (90.44%), Postives = 128/136 (94.12%), Query Frame = 1
Query:  232 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            + DAGMDAVQRRLMFEDECILVDENDRVVGH+ KYNCHLMEKIE+ NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELIEEN LGVRNAAQRKL DELGI  EDVPVDEFTPLGR+LY+
Sbjct:    4 SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYK 139          

HSP 2 Score: 58.5362 bits (140), Expect = 2.515e-78
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +APSDGKWGEHE+DYLLF VRDV + PNPD
Sbjct:  139 KAPSDGKWGEHEVDYLLFIVRDVKLQPNPD 168          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 7.265e-78
Identity = 124/141 (87.94%), Postives = 131/141 (92.91%), Query Frame = 1
Query:  217 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            TMG+   DAGMDAVQRRLMFEDECILVDEND+VVGHE+KYNCHLMEKIES NLLHRAFSVFLFNSKYELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI  ED+PVD+F PL RILY+
Sbjct:   54 TMGEVV-DAGMDAVQRRLMFEDECILVDENDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYK 193          

HSP 2 Score: 58.9214 bits (141), Expect = 7.265e-78
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +APSDGKWGEHELDYLLF +RDV++ PNPD
Sbjct:  193 KAPSDGKWGEHELDYLLFIIRDVNLDPNPD 222          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 7.937e-77
Identity = 121/140 (86.43%), Postives = 130/140 (92.86%), Query Frame = 1
Query:  220 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            MG+A  DAGMDAVQRRLMF+DECILVDE DRVVGHE+KYNCH+ EKIES N+LHRAFSVFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI  EDVPVDEFTPL R+LY+
Sbjct:   54 MGEAA-DAGMDAVQRRLMFDDECILVDEVDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYK 192          

HSP 2 Score: 62.3882 bits (150), Expect = 7.937e-77
Identity = 26/30 (86.67%), Postives = 29/30 (96.67%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +APSDGKWGEHELDYLLF VRDV+V+PNPD
Sbjct:  192 KAPSDGKWGEHELDYLLFIVRDVAVHPNPD 221          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.350e-76
Identity = 119/140 (85.00%), Postives = 129/140 (92.14%), Query Frame = 1
Query:  220 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            MG+A  DAGMDAVQRRLMF+DECILVDE D VVGHE+KYNCHL EKIES N+LHRAF+VFLFNSK+ELLLQQRS TKVTFPLVWTNTCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI  EDVPVDEFTP+ R+LY+
Sbjct:   57 MGEAAADAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYK 196          

HSP 2 Score: 61.6178 bits (148), Expect = 1.350e-76
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +APSDGKWGEHELDYLLF VRDV ++PNPD
Sbjct:  196 KAPSDGKWGEHELDYLLFIVRDVGIHPNPD 225          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.533e-40
Identity = 84/140 (60.00%), Postives = 101/140 (72.14%), Query Frame = 1
Query:  220 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            M + +TD  +D  Q +LM E  CILVDENDR +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   SEL E +A+GVR AAQR+L  ELGI +E+VP +E   L RI Y+
Sbjct:    1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPSELEENDAIGVRRAAQRRLKAELGIPMEEVPPEEINYLTRIHYK 137          

HSP 2 Score: 38.5058 bits (88), Expect = 1.533e-40
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +A SD  WGEHE+DY+L   ++V++ P+P+
Sbjct:  137 KAQSDSIWGEHEIDYILLVKKNVTLNPDPN 166          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.533e-40
Identity = 81/140 (57.86%), Postives = 98/140 (70.00%), Query Frame = 1
Query:  220 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI +E+VP +E   L RI Y+
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYK 137          

HSP 2 Score: 42.743 bits (99), Expect = 1.533e-40
Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +A SDG WGEHE+DY+LF  ++V++ P+P+
Sbjct:  137 KAQSDGIWGEHEIDYILFVRKNVTLNPDPN 166          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 7.498e-40
Identity = 78/131 (59.54%), Postives = 95/131 (72.52%), Query Frame = 1
Query:  247 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TNTCCSHPL   +EL E +ALGVR AAQR+L  ELGI +E+VP +E   L RI Y+
Sbjct:    9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYK 137          

HSP 2 Score: 40.4318 bits (93), Expect = 7.498e-40
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +A SDG WGEHE+DY+L   ++V++ P+P+
Sbjct:  137 KAQSDGIWGEHEIDYILLVRKNVTLNPDPN 166          
The following BLAST results are available for this feature:
BLAST of FC921674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDI2_CAMAC3.576e-8088.57Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI1_CAMAC3.584e-8089.29Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_ARATH8.675e-7989.71Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_ARATH2.515e-7890.44Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI1_CLABR7.265e-7887.94Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI2_CLABR7.937e-7786.43Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLAXA1.350e-7685.00Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_BOVIN1.533e-4060.00Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_MACFA1.533e-4057.86Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_HUMAN7.498e-4059.54Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC32108A07EF RVDevelopN Citrus clementina cDNA clone C32108A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921674 ID=FC921674; Name=FC921674; organism=Citrus clementina; type=EST; length=726bp
CATATTGAGGTCCCTCTGTCTACTACTACGCTTTATAACTGCGCCACAAC
CAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTCGAAGTCCC
GTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTTCGATTCGC
AGGCCTCTGTCCTTGAGGGGTGCCTCTCGTTCTAGCTCTTCTTCTTCTTC
CGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGCCGGCATGG
ACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTTTGGTGGAT
GAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGTCACTTGAT
GGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAGCGTATTTT
TGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTGGAACCAAA
GTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATCCTCTGTA
CCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGGAATGCTG
CACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGTTGAAGATGTGCCA
GTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAGGCCCCTTCTGAT
GGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCACTGTCCGAGA
TGTTAGTGTTTACCCAAATCCTGATG
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