FC923483
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_ARATH (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Arabidopsis thaliana GN=At1g61700 PE=2 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 3.583e-33 Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSD 246 MI+PVRCFTCGKVIGNKWDTYL+LLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNT++KSD Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTMEKSD 69
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_BRANA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.361e-32 Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDTS 252 MIIPVRCFTCGKVIGNKWD YLDLLQ DY EGDALDAL LVRYCCRRMLMTHVDLIEKLLNYNTL+KSD S Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDNS 71
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Mus musculus GN=Polr2l PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 240 MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY L+K Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Homo sapiens GN=POLR2L PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 240 MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY L+K Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Drosophila melanogaster GN=Rpb10 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 240 MIIP+RCFTCGKVIGNKW++YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY L+K Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLEK 67
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_CHILA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Chinchilla lanigera GN=POLR2L PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 240 MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY L+K Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus GN=POLR2L PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27 Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 240 MIIPVRCFTCGK++GNKW+ YL LLQA+Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY L+K Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLEK 67
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum GN=polr2l PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26 Identity = 56/65 (86.15%), Postives = 57/65 (87.69%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTL 234 MIIPVRCFTCGKVIGNKWD YL LLQ DY EGDALDAL L RYCCRRML+THVDLIEKLLNY L Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLLNYTPL 65
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Caenorhabditis elegans GN=Y37E3.3 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26 Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 240 MIIP+RCFTCGKVIG+KW+TYL LQ++Y EGDALDALGL RYCCRRML+ HVDLIEKLLNY+ L+K Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLLNYHPLEK 67
BLAST of FC923483 vs. ExPASy Swiss-Prot
Match: RPAB5_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Schizosaccharomyces pombe GN=rpb10 PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25 Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 1 Query: 40 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDK 240 MIIP+RCF+CGKVIG+KWDTYL LLQ D EG+ALD LGL RYCCRRM++THVDLIEKLL YN L K Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLLCYNPLSK 67 The following BLAST results are available for this feature:
BLAST of FC923483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923483 ID=FC923483; Name=FC923483; organism=Citrus clementina; type=EST; length=707bpback to top |