FC923674

Overview
NameFC923674
Unique NameFC923674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923674_ssr77 microsatellite FC923674_ssr77:77..91. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4514 contig Ccv1_Contig4514:3..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923674 vs. ExPASy Swiss-Prot
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.446e-18
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 2
Query:  233 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQ 535
            D+ T++C +C + IP  N  +H  HC RN+  C +C +  P+   E H    H  V C +C++ +E+ +L  H+  +CP R+  C  C+  L  + L EH+
Sbjct:    7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHE 106          

HSP 2 Score: 27.335 bits (59), Expect = 7.446e-18
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  630 EVCGNRTELCHLCNRYIRLRERYNH 704
            + CG RTELC  C R + +++   H
Sbjct:  107 DYCGARTELCGNCGRNVLVKDLKTH 131          
BLAST of FC923674 vs. ExPASy Swiss-Prot
Match: TRAD1_HUMAN (TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.636e-17
Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 2
Query:  233 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQ 535
            D+ T++C +C + IP  N  +H  HC RN+  C  C +  P+   E H    H  V C +C++ +E+ +L  H+  +CP R+  C  C+  L  + L EH+
Sbjct:    7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHE 106          

HSP 2 Score: 27.335 bits (59), Expect = 1.636e-17
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  630 EVCGNRTELCHLCNRYIRLRERYNH 704
            + CG RTELC  C R + +++   H
Sbjct:  107 DYCGARTELCGNCGRNVLVKDLKTH 131          
BLAST of FC923674 vs. ExPASy Swiss-Prot
Match: TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.674e-17
Identity = 33/102 (32.35%), Postives = 55/102 (53.92%), Query Frame = 2
Query:  230 SDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQ 535
            +D+ T++C +C + IP  N  +H  HC RN+  C VC +  P+   E H    H  V C +C++ +E+  L  H+  +CP R+  C  C+  L  + L +H+
Sbjct:    6 NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTC-KCNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHE 106          

HSP 2 Score: 28.1054 bits (61), Expect = 4.674e-17
Identity = 10/25 (40.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  630 EVCGNRTELCHLCNRYIRLRERYNH 704
            + CG RTELC  C R + +++   H
Sbjct:  107 DYCGARTELCGTCGRNVLVKDLKTH 131          
BLAST of FC923674 vs. ExPASy Swiss-Prot
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.075e-17
Identity = 33/101 (32.67%), Postives = 53/101 (52.48%), Query Frame = 2
Query:  233 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQ 535
            D+ +++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H  V C +C++ +E+  L  H   +CP R+  C  C+  L  V L EH+
Sbjct:    7 DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTC-KCNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHE 106          

HSP 2 Score: 28.8758 bits (63), Expect = 6.075e-17
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  630 EVCGNRTELCHLCNRYIRLRERYNH 704
            + CG RTELC  C R + ++E   H
Sbjct:  107 DYCGARTELCGSCGRNVLVKELKTH 131          
BLAST of FC923674 vs. ExPASy Swiss-Prot
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 6.076e-17
Identity = 33/101 (32.67%), Postives = 52/101 (51.49%), Query Frame = 2
Query:  233 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQ 535
            D+  ++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H  V C +C++ +E+  L  H   +CP R+  C  C+  L  V L EH+
Sbjct:    7 DQAARLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTC-KCNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHE 106          

HSP 2 Score: 29.261 bits (64), Expect = 6.076e-17
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 3
Query:  630 EVCGNRTELCHLCNRYIRLRERYNH 704
            + CG RTELC  C R + ++E   H
Sbjct:  107 DYCGARTELCGSCGRNVLVKELQTH 131          
BLAST of FC923674 vs. ExPASy Swiss-Prot
Match: XAF1_HUMAN (XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.763e-16
Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 2
Query:  248 ICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFPLPAVDLAEHQ 535
            +C +C R + S+N  LH A+C R L  C  C + VP++  EEH    H  V C+ C ++M++  L  HK  +C +R V C FC+  +    L  H+
Sbjct:    7 VCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCTMCQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHE 102          

HSP 2 Score: 27.7202 bits (60), Expect = 1.763e-16
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 3
Query:  636 CGNRTELCHLCNRYIRLRERYNH 704
            CG+RTELC  C ++I  R    H
Sbjct:  105 CGSRTELCQGCGQFIMHRMLAQH 127          
BLAST of FC923674 vs. ExPASy Swiss-Prot
Match: XAF1_BOVIN (XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.168e-14
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 2
Query:  245 KICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGEKCPQRIVTCDFCEFP--LPAVDLAEH 532
            ++C +C R + S+++ LH AHC   L  C  C + V +   EEH    H  V C+ C +++ +  L  H+ ++C +R V C FC+    L  VDL EH
Sbjct:    6 QVCRNCKRRVASNHLGLHEAHCLMYLVLCPECKEPVLQHEMEEHCQGGHQQVGCAMCQQSVPKHSLDSHEAQECQERPVECQFCQLAVRLNKVDLHEH 103          

HSP 2 Score: 26.9498 bits (58), Expect = 1.168e-14
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 3
Query:  636 CGNRTELCHLCNRYIRLRERYNH 704
            CG +TELC  C +++ LR    H
Sbjct:  105 CGQQTELCPDCGQHVMLRVLARH 127          
The following BLAST results are available for this feature:
BLAST of FC923674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TRAD1_MACFA7.446e-1832.67TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_HUMAN1.636e-1732.67TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_BOVIN4.674e-1732.35TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_MOUSE6.075e-1732.67TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_RAT6.076e-1732.67TRAF-type zinc finger domain-containing protein 1 ... [more]
XAF1_HUMAN1.763e-1635.42XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 P... [more]
XAF1_BOVIN1.168e-1434.69XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=... [more]
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Properties
Property NameValue
Genbank descriptionC31707G03EF StrClemenN Citrus clementina cDNA clone C31707G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923674 ID=FC923674; Name=FC923674; organism=Citrus clementina; type=EST; length=709bp
AGAGAGAATCAAAATCTCCTCTTTCCTCAGACACAGAAGCCTCCCTTCCC
AATTTAAAGAAAAAAAAAATTATTTCTTATTTTATTTTATTTTCCCCCTA
ATTTTCTGAGAAATCCATAAAACAGCATCTAGCGAGAACAAGACTGCGAC
ATCACACAAACTTCTTCTATCTCTCCCTAAAAAGAGCTACGACGTCGAAT
TGATTGATCGTATCGCGATGGCAATGACTTCTGATGAAACCACAAAAATA
TGCAGTCACTGTGACAGAGCTATACCGTCTTCAAATATTGATTTGCATTT
TGCACATTGCTCGCGGAATCTGGAACGGTGTAAAGTATGTGGTGACATGG
TTCCAAGGAAATATGCTGAGGAGCACTTCTTAAATACCCATGCCCCGGTG
GCCTGTTCACAGTGCAGCGAGACAATGGAGCGTGAAATTTTAGCCATCCA
TAAAGGTGAAAAGTGCCCGCAAAGGATTGTCACTTGCGACTTTTGTGAGT
TTCCACTGCCTGCAGTTGATCTGGCCGAGCATCAGGTGGCAATCGTCAAT
AATTTTGAAAATGGAAAGACAATAGCTGATGCCATATCTTCTTACTTGGG
TGTGATGCTTTGTTGCTTTGTTATTGTAGGAAGTCTGTGGGAATCGCACA
GAACTTTGTCATCTGTGTAACAGATATATTAGGTTGCGAGAAAGATATAA
CCATGAAAG
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