FC924871
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC924871 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2) HSP 1 Score: 283.108 bits (723), Expect = 1.149e-75 Identity = 145/227 (63.88%), Postives = 171/227 (75.33%), Query Frame = 3 Query: 3 VICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS-SCSKDAERNISEPPNQQASQTSVKMPTQQSSSISSPWAVDDFLQFSDFESSGK-KEQLEFGELEWIADMGIFNDQLPQEALAAAEVPQLPVSQPNNLISSYRPTKFNMPYKKPRIEIP-DDDDEHFTVPDLG 674 +ICCADEAALCAKCDVEVHAANKLASKHQRL L LS K PPCDIC EKAAFIFCVEDRAL C+DCDE H+P + SANHQRFLATGIRVALSS SC+++ E+N +P NQQ+ K PTQQ ++ S WA D+F +SD + S K KEQL+ GEL+W+A+MG+F DQ QEAL AEVP+L S + S RP K N+P KK R+E DD++EHF VPDLG Sbjct: 15 LICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHFDPSNQQSLS---KPPTQQPAAPSPLWATDEFFSYSDLDCSNKEKEQLDLGELDWLAEMGLFGDQPDQEALPVAEVPELSFSHLAHAHSYNRPMKSNVPNKKQRLEYRYDDEEEHFLVPDLG 238
BLAST of FC924871 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 2.560e-75 Identity = 148/235 (62.98%), Postives = 174/235 (74.04%), Query Frame = 3 Query: 3 VICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSS-CSKDAERNISEPPN--QQASQTSVKMPTQQ----SSSISSPWAVDDFLQFSDFESSGKKEQLEF--GELEWIADMGIFNDQLPQEALAAAEVPQLPVSQPNNLISSYRPTKFNMPYKKPRIE--IPDDDDEHFTVPDLG 674 VICCADEAALC +CD+E+HAANKLASKHQRL L LS K P CDICQEKAAFIFCVEDRAL C+DCDE IH S SANHQRFLATGI+VAL+S+ CSK+ E+N EP N Q+A+Q K +QQ SS+ PWAVDDF FSD ES+ KK QL+ GEL+W +DMG F DQ+ +AL AAEVP+L VS + + SY+P K N+ +KKPR E DDD+EHF VPDLG Sbjct: 15 VICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQPEPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDKKGQLDLGAGELDWFSDMGFFGDQINDKALPAAEVPELSVSHLGH-VHSYKPMKSNVSHKKPRFETRYDDDDEEHFIVPDLG 248
BLAST of FC924871 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 2.596e-27 Identity = 68/187 (36.36%), Postives = 94/187 (50.27%), Query Frame = 3 Query: 3 VICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS--------SCSKDAERNISEPPNQQA-------------------------------SQTSVKMPTQQSSSISS---PWAVDDFLQFSDFESS 437 V+CCADEAALC CD ++HAANKLA KHQR+ L ++ +P CDICQE + F FC++DRAL C+ CD IH+ + HQRFL TGI+V L S S + ++ + P Q+ QTS K+P S S + W +++ +DF+ S Sbjct: 15 VLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTGPSTKSSPTNDDKTMETKPFVQSIPEPQKMAFDHHHHQQQQEQQEGVIPGTKVNDQTSTKLPLVSSGSTTGSIPQWQIEEIFGLTDFDQS 201
BLAST of FC924871 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 9.234e-25 Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 3 Query: 3 VICCADEAALCAKCDVEVHAANKLASKHQR--LLLQCLSNKLPP-CDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQ---ASQTSVKMPTQQSSSISSP 392 V C ADEA+LC CD +VH ANKLASKH R LL SN P CDICQ+K A +FC +DRA+ CKDCD IH+ + H RFL TG++++ +SS K ++ S + Q +S+ P +S+P Sbjct: 15 VFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKSSSSSSSNQDFSVPGSSISNPPPLKKPLSAP 150
BLAST of FC924871 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.977e-15 Identity = 52/163 (31.90%), Postives = 80/163 (49.08%), Query Frame = 3 Query: 3 VICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR--FLATGIRVALSSSCSKDAERNISEPPNQ-----------QASQTSVKMPTQ-QSSSISSPWAV-DDFLQFSDFESSGKK 446 V C AD A LC+ CD +VHAAN+LAS+H+R+ + C C+ A FC D A C CD IHS L+ HQR L S++ + E +++P N+ +A S +P ++S ++ +++ D+FL D+ SS K+ Sbjct: 22 VYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIGDEFLNLVDYSSSDKQ 175
BLAST of FC924871 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13 Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 3 Query: 3 VICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERN 311 + C AD A LC CD ++H ANKLAS+H+R+ L C++C++ A + C D A C CD IHS LS H+R T A+ + S + N Sbjct: 18 LFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVN 111
BLAST of FC924871 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12 Identity = 48/157 (30.57%), Postives = 68/157 (43.31%), Query Frame = 3 Query: 9 CCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQASQTSVKMPTQQSSSISSPWAVDDFLQFSDFESSGKKEQLEFGELEWI 479 C D A LC CD +VHAANKLAS+H R+ + C++C++ A + C D A C CD IHS L+ H+R T ++SS S T+V +DD FSD + +G +E+ E W+ Sbjct: 18 CRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGS--------------VKHTAVNF-------------LDD-CYFSDIDGNGSREEEEEEAASWL 137
BLAST of FC924871 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11 Identity = 39/100 (39.00%), Postives = 49/100 (49.00%), Query Frame = 3 Query: 3 VICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDA 302 V C AD A LC CD VHAAN++AS+H+R+ + C C+ A C D A C CD IHS L+ HQR I ++SCS A Sbjct: 26 VYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR---VPILPLSANSCSSMA 113
BLAST of FC924871 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11 Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 3 Query: 3 VICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 248 V C AD A LC CD +VH+AN++AS+H+R+ + C+ C+ A C D A C CD +HS L+ HQR Sbjct: 30 VYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102 The following BLAST results are available for this feature:
BLAST of FC924871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC924871 ID=FC924871; Name=FC924871; organism=Citrus clementina; type=EST; length=774bpback to top |