FC925149

Overview
NameFC925149
Unique NameFC925149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1952 contig Ccv1_Contig1952:3..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC925149 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.554e-14
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:  314 LESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFDQNGPHYDPKDSSSFKNITC 514
            +E+ V  G GEY M+V +GTP   +  I+DTGSDL W QC PC  CF Q  P ++P+DSSSF  + C
Sbjct:   85 IETPVYAGDGEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPC 151
[Close]
BLAST of FC925149 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.357e-14
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2 
Query:  272 ESYASGVSGQLVATLESGVSLGAGEYFMDVFVGTPPKHYYFILDTGSDLNWIQCVPCYDCFDQNGPHYDPKDSSSFKNITC 514
            E+  +G SG     +E+ V  G GEY M++ +GTP + +  I+DTGSDL W QC PC  CF+Q+ P ++P+ SSSF  + C
Sbjct:   75 EAMLNGPSG-----VETSVYAGDGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPC 150
The following BLAST results are available for this feature:
BLAST of FC925149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP2_NEPGR2.554e-1450.75Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR4.357e-1444.44Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP3YC24FM1 TF Citrus clementina cDNA clone KN0AAP3YC24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC925149 ID=FC925149; Name=FC925149; organism=Citrus clementina; type=EST; length=519bp
TGCTCTTGACTATGATGATGGAGATGATTTGTTAACATTGAAACTCAGTA
AACAAAAGGTGAAGCTTCATCTAAAGCACCGGTCGAAGAATCGAGAAACA
GAGCCAAAAAAATCTGTGTCTGAGTCCACAATAAGGGACTTGACAAGAAT
TCAGGCACTTCATAGGAGGATCATTGAGAAGAAGAATCAAAACACCGTTT
CAAGGCTAAAGAAAGAGAGTCAGAAATCGAAGAAGCAAATTAAGCCGGTG
TTGACTCCGGCAGCTTCACCGGAATCTTATGCAAGTGGGGTTTCGGGCCA
GCTGGTGGCGACTTTGGAGTCCGGGGTGAGTCTTGGTGCTGGGGAGTACT
TCATGGATGTGTTTGTTGGTACACCTCCTAAACACTATTATTTTATTCTT
GATACCGGTAGTGACCTTAATTGGATTCAATGTGTGCCTTGTTATGATTG
TTTTGACCAAAATGGGCCTCATTACGATCCTAAAGACTCTAGTTCCTTTA
AGAATATCACTTGCCATGA
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