FC929943

Overview
NameFC929943
Unique NameFC929943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12552 contig Ccv1_Contig12552:25..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929943 vs. ExPASy Swiss-Prot
Match: TYRA2_ARATH (Arogenate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT2 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 9.232e-61
Identity = 114/160 (71.25%), Postives = 134/160 (83.75%), Query Frame = 3
Query:  240 IRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMY 719
            IRAIDAAQ FDYE+QL ++Y KS++LKIAV+GFGNFGQFL+K   RH H L+ HSRSD+S A    + A FF + +DLCE HPDVVLL TSILST+SVL+S PFQRL+RSTLFVDVLSVKEFP+ LF+KYLP++FDILCTHPMFGPES K SW  LPF+Y
Sbjct:   34 IRAIDAAQIFDYETQLKSEYRKSSALKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYSDAANS-IGARFFDNPHDLCEQHPDVVLLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVKEFPKALFIKYLPKEFDILCTHPMFGPESGKHSWSGLPFVY 192          
BLAST of FC929943 vs. ExPASy Swiss-Prot
Match: TYRA1_ARATH (Arogenate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=TYRAAT1 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.332e-50
Identity = 94/161 (58.39%), Postives = 122/161 (75.78%), Query Frame = 3
Query:  237 VIRAIDAAQPFDYESQLHTQYVKSTSLKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSSWENLPFMY 719
            ++R+ D    ++Y SQ+       + LKI ++GFGNFGQFL K   +  HT+L +SRSD++    + L   +F+DL+DL E HP+V++L TSILST+ VL+S+PFQRLKRSTLFVDVLSVKEFPRNLFL+ LPQDFDILCTHPMFGPES K+ W NL F++
Sbjct:  339 MMRSEDVVVKYEYNSQVSGSVNDGSRLKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDYTDEAAK-LGVSYFSDLDDLFEEHPEVIILCTSILSTEKVLESLPFQRLKRSTLFVDVLSVKEFPRNLFLQTLPQDFDILCTHPMFGPESGKNGWNNLAFVF 498          

HSP 2 Score: 182.57 bits (462), Expect = 1.869e-45
Identity = 88/137 (64.23%), Postives = 108/137 (78.83%), Query Frame = 3
Query:  315 LKIAVIGFGNFGQFLAKAFARHHHTLLVHSRSDHSPAVRQQLNAPFFADLNDLCELHPDVVLLSTSILSTQSVLKSIPFQRLKRSTLFVDVLSVKEFPRNLFLKYLPQDFDILCTHPMFGPESAKSS--WENLPFMY 719
            L+IA+IGFGN+GQFLA+      H L  HSRSDHS A R+ L   +F DL+DLCE HPDVVLL TSILS +++LK++PFQRL+R+TLFVDVLSVKEF + L L+YLP+DFDILCTHPMFGP+S  S+  W  L F+Y
Sbjct:   53 LRIAIIGFGNYGQFLAETLISQGHILFAHSRSDHSSAARR-LGVSYFTDLHDLCERHPDVVLLCTSILSIENILKTLPFQRLRRNTLFVDVLSVKEFAKTLLLQYLPEDFDILCTHPMFGPQSVSSNHGWRGLRFVY 188          
The following BLAST results are available for this feature:
BLAST of FC929943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TYRA2_ARATH9.232e-6171.25Arogenate dehydrogenase 2, chloroplastic OS=Arabid... [more]
TYRA1_ARATH7.332e-5058.39Arogenate dehydrogenase 1, chloroplastic OS=Arabid... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34002B02EF PostHarvC1 Citrus clementina cDNA clone C34002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929943 ID=FC929943; Name=FC929943; organism=Citrus clementina; type=EST; length=719bp
GGCGTTAAACCAGTTAACACACTAGTGTATTGGGGCGTCTCTGTTGCTCT
TCCTCCTCTTCTCAGTTCTCTAATCTCTTCCCAACAATGTTCTCGACAGC
GTTCTCGACAAATCTCCCCAAAACAATCCCATCACTGCCGCCGCCACCAC
TACACTCATTCCCTCCAATTGTCCCCTCATTTTCCCTCCCACTTTCCTCC
CCCAAATCCCGCCACCACCAGGGTCCACTCCGCCACGTCATCCGCGCAAT
CGACGCCGCCCAGCCCTTCGACTATGAATCCCAACTCCACACCCAGTACG
TGAAGAGCACGTCCCTCAAAATCGCCGTCATTGGCTTCGGCAACTTTGGC
CAATTCCTCGCCAAGGCCTTCGCCCGCCACCACCACACCCTTCTCGTCCA
CTCCCGCTCCGATCACTCCCCCGCTGTCCGTCAACAACTCAACGCCCCCT
TCTTCGCCGACCTCAACGACCTTTGCGAGCTCCACCCCGACGTCGTTTTG
CTGTCCACCTCCATCCTCTCCACCCAATCCGTCCTCAAATCAATCCCCTT
CCAGCGGCTCAAACGCAGCACCCTCTTCGTGGACGTCCTTTCCGTTAAAG
AATTCCCCAGAAACCTCTTCCTCAAGTACTTGCCTCAGGACTTTGATATT
TTGTGCACGCACCCAATGTTTGGCCCCGAGAGTGCAAAAAGTTCGTGGGA
AAATCTCCCTTTTATGTAT
back to top