FC930143

Overview
NameFC930143
Unique NameFC930143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig390 contig Ccv1_Contig390:75..764. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930143 vs. ExPASy Swiss-Prot
Match: FBL5_ARATH (F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana GN=FBL5 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.996e-65
Identity = 125/183 (68.31%), Postives = 148/183 (80.87%), Query Frame = 1 
Query:  142 MVGEATNLSSEDLNLCFEKXXXXXXXXXXXXXVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 690
            MV E    + ++LNLCFE              +KM+GV+I+EWKDIP+ELL++IL+LVD+ TVI+AS +CSGWRDA+ LGLT LSLSWCK NMN+LVLSLAPK  KLQTLVLRQDKPQLEDNAVEAIAN CH+LQDLDLSKS K++D SLY+LA GC NLT+LN+SGCTSFSD ALA+L  FC
Sbjct:    1 MVSEGA--TRKELNLCFEN-------------MKMEGVLISEWKDIPVELLMKILNLVDDRTVIIASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLTRFC 168
[Close]
BLAST of FC930143 vs. ExPASy Swiss-Prot
Match: FBXL2_BOVIN (F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 40/106 (37.74%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:  373 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 690
            C  L +L+LSWC     + V +L      L+ L+LR    QLED A++ I N CH+L  L+L    +++D  +  L  GCP L  L +SGC S +D +L  L   C
Sbjct:  155 CRHLEYLNLSWCDQITKDGVEALVRGCRGLRALLLR-GCTQLEDEALKHIQNYCHELVSLNLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALALNC 259
The following BLAST results are available for this feature:
BLAST of FC930143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FBL5_ARATH1.996e-6568.31F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana... [more]
FBXL2_BOVIN3.697e-1137.74F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 ... [more]
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Properties
Property NameValue
Genbank descriptionC34004C04EF PostHarvC1 Citrus clementina cDNA clone C34004C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930143 ID=FC930143; Name=FC930143; organism=Citrus clementina; type=EST; length=690bp
GACCCCCTGTCCAATCTCTATTAGCTTCATCAATCTTCTCGAGAACGCAC
AAACTATTTTTAGAAAGAGATATAAAGGAATCGGCAATCGTAAGAAGGCA
AACAAATTGTATACTTCAGTTAAGGCGGTGCTGTGTCAAGAATGGTGGGA
GAAGCAACAAATTTGAGTAGTGAGGACTTGAACTTGTGCTTTGAGAAGAT
GATGATGGCTGGTGCTGGTGCTGATAGAGCTGGCGGTGTGAAAATGGATG
GCGTGGTGATCACTGAGTGGAAAGATATTCCCATGGAGCTACTGTTGAGG
ATTCTTTCGCTTGTTGATGAACCAACGGTGATTGTGGCTTCTGGGGTTTG
TAGTGGATGGAGGGATGCCATTTGCTTGGGTCTCACCCATCTGTCCCTCT
CTTGGTGCAAGAACAACATGAACAACTTGGTTCTGTCTCTTGCTCCTAAG
CTCACGAAATTGCAAACTTTGGTGCTGCGTCAAGACAAGCCACAACTTGA
GGATAACGCAGTTGAGGCTATAGCAAATTCTTGTCATGATTTGCAGGACC
TGGACCTTAGCAAAAGCTTCAAGCTTAGTGACCGGTCCTTGTATGCCCTG
GCTCATGGTTGTCCCAATCTCACTAGACTCAACATCAGTGGTTGTACATC
GTTTAGCGATCATGCCCTTGCATACCTCTGTGGTTTTTGC
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