FC930172
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC930172 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17 Identity = 55/131 (41.98%), Postives = 74/131 (56.49%), Query Frame = 3 Query: 279 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSIN 668 + GD G L E+ V M C+ CVDAV + L+ GV+NVEV L NQ+V + + P + + LE TGR+A L G G + + AAVA +G V GVVR Q++ EL IE GL PG HG ++ Sbjct: 3 SKSGDGGTMCAL-EFTVQMSCQSCVDAVHKTLKGAAGVQNVEVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLKNLGAAVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVH 132
BLAST of FC930172 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17 Identity = 54/131 (41.22%), Postives = 75/131 (57.25%), Query Frame = 3 Query: 279 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKG-PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSIN 668 + GD G L E+ V M C+ CVDAV + L+ V GV+NV+V L NQ+V + + P + + LE TGR+A L G G + + AAVA +G + GVVR Q++ EL IE GL PG HG ++ Sbjct: 3 SKSGDGGTVCAL-EFAVQMSCQSCVDAVHKTLKGVAGVQNVDVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLQNLGAAVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVH 132
BLAST of FC930172 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.443e-17 Identity = 55/131 (41.98%), Postives = 75/131 (57.25%), Query Frame = 3 Query: 279 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSIN 668 + G+QG L E+ V M C+ CVDAV++ LQ V GV++VEV L +Q+V + + P + + LE TGR+A L G G + + AAVA GP V GVVR Q+ E IE GL PG HG ++ Sbjct: 3 SDSGNQGTLCTL-EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVH 132
BLAST of FC930172 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.747e-16 Identity = 50/120 (41.67%), Postives = 67/120 (55.83%), Query Frame = 3 Query: 312 LTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSIN 668 + E+ V M C+ CVDAV + LQ V G+++VEV L NQ+V + + P + + LE TGR+A L G G + AAVA G V GVVR Q+ E IE GL PG HG ++ Sbjct: 13 MLEFAVQMTCQSCVDAVSRSLQGVAGIQSVEVQLENQMVLVQTTLPSQVVQALLEDTGRQAVLKGMGSGRWQNLEAAVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVH 132 The following BLAST results are available for this feature:
BLAST of FC930172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930172 ID=FC930172; Name=FC930172; organism=Citrus clementina; type=EST; length=672bpback to top |