FC930187

Overview
NameFC930187
Unique NameFC930187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14135 contig Ccv1_Contig14135:23..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_CUCSA (60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 1.592e-97
Identity = 175/209 (83.73%), Postives = 191/209 (91.39%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            KAQK+KAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDITAQIISASIAGD+VLASAY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEG+VEATGEDYSVEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAG++K+ +QLD EVHRKYI+ GHVAAYMRTLMED
Sbjct:    5 KAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDITAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMED 213          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL52_ARATH (60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3)

HSP 1 Score: 340.887 bits (873), Expect = 4.057e-93
Identity = 167/209 (79.90%), Postives = 185/209 (88.52%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEG+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L ED
Sbjct:    5 KSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGED 213          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL51_ARATH (60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 5.298e-93
Identity = 167/209 (79.90%), Postives = 185/209 (88.52%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYEG+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF K++KQLDAE+HR YIY GHV+ YM+ L ED
Sbjct:    5 KSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGED 213          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL51_ORYSI (60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2)

HSP 1 Score: 331.643 bits (849), Expect = 2.461e-90
Identity = 158/209 (75.60%), Postives = 182/209 (87.08%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K QK+ AY+KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEG++EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+
Sbjct:    6 KTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEE 214          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL51_ORYSJ (60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 7.161e-90
Identity = 158/209 (75.60%), Postives = 181/209 (86.60%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K QK+ AY KR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVLK+  +D EYEG++EATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+
Sbjct:    6 KTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEE 214          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL52_ORYSJ (60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.264e-86
Identity = 156/209 (74.64%), Postives = 178/209 (85.17%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K QK+ AYFKR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV   TNKDITAQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEG+VEATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAGF KD KQLD+++HRKYIY GHVA YMR++ E+
Sbjct:    9 KTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEE 214          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_CAEBR (60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2)

HSP 1 Score: 262.692 bits (670), Expect = 1.404e-69
Identity = 130/209 (62.20%), Postives = 155/209 (74.16%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+KAYFKRYQVK KRRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKDI AQ+  + I GD+V+ASAYAHELPRYGL+ GLTNYAAAY TGLLLARR LK + +D+ Y+GH E TGEDY+VE   +R PF+A+LD+GL +TTTG+++F            +PHSE RF GF ++SK  +AE HR  I   HVA YM  L E+
Sbjct:    5 KVIKNKAYFKRYQVKLKRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRLTNKDIVAQLAYSKIEGDVVVASAYAHELPRYGLKAGLTNYAAAYATGLLLARRHLKAIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKDYNAEAHRDRILGKHVADYMSLLKEE 213          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_CAEEL (60S ribosomal protein L5 OS=Caenorhabditis elegans GN=rpl-5 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.395e-69
Identity = 128/209 (61.24%), Postives = 157/209 (75.12%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+KAYFKRYQVK +RRREGKTDY AR RL  QDKNKYNTPKYR +VR TNKD+ AQ+  + I GD+V+ASAY+HELPRYGL+VGLTNYAAAY TGLLLARR LK + +D+ Y+GH E TGEDY+VE   +R PF+A+LD+GL +TTTG+++F            +PHSE RF GF ++SK+ +AE HR  I   HVA YM  L E+
Sbjct:    5 KVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEE 213          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5_SUBDO (60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.128e-69
Identity = 132/210 (62.86%), Postives = 157/210 (74.76%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPT-ENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+KAYFKRYQVK++RRREGKTDYRAR RL+ QDKNKYNTPKYR V+RFTN DI  QII A I GD VL SAYAHELPRYG++VGLTNYAAAYCTGLLLARR+L  L +  +Y G  +  GED++VE   +  RPFRA LDVGL +TTTGNRVF            IPHS  RF G+ ++S QL+A+  R+YI+ GHV+ YM+ L E+
Sbjct:    5 KVIKNKAYFKRYQVKFRRRREGKTDYRARKRLVVQDKNKYNTPKYRIVIRFTNTDIICQIIYAKIEGDKVLVSAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTNLGLADKYAGQTDIDGEDFNVEHMGDGPRPFRAFLDVGLTRTTTGNRVFAAMKGAVDGGIDIPHSPSRFVGYDEESSQLEADKLRQYIFGGHVSDYMKYLQEE 214          
BLAST of FC930187 vs. ExPASy Swiss-Prot
Match: RL5A_XENLA (60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-A PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.716e-67
Identity = 125/210 (59.52%), Postives = 154/210 (73.33%), Query Frame = 2
Query:   83 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENR-RPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRTLMED 709
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  +     F   LD GL +TTTGN+VF            IPHS KRF G+  +SK+ + EVHRK+I+  +VA YMR LME+
Sbjct:    5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGIKVGLTNYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEE 214          
The following BLAST results are available for this feature:
BLAST of FC930187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
RL5_CUCSA1.592e-9783.7360S ribosomal protein L5 OS=Cucumis sativus GN=RPL... [more]
RL52_ARATH4.057e-9379.9060S ribosomal protein L5-2 OS=Arabidopsis thaliana... [more]
RL51_ARATH5.298e-9379.9060S ribosomal protein L5-1 OS=Arabidopsis thaliana... [more]
RL51_ORYSI2.461e-9075.6060S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL51_ORYSJ7.161e-9075.6060S ribosomal protein L5-1 OS=Oryza sativa subsp. ... [more]
RL52_ORYSJ1.264e-8674.6460S ribosomal protein L5-2 OS=Oryza sativa subsp. ... [more]
RL5_CAEBR1.404e-6962.2060S ribosomal protein L5 OS=Caenorhabditis briggsa... [more]
RL5_CAEEL2.395e-6961.2460S ribosomal protein L5 OS=Caenorhabditis elegans... [more]
RL5_SUBDO3.128e-6962.8660S ribosomal protein L5 OS=Suberites domuncula GN... [more]
RL5A_XENLA1.716e-6759.5260S ribosomal protein L5-A OS=Xenopus laevis GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionC34004F12EF PostHarvC1 Citrus clementina cDNA clone C34004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930187 ID=FC930187; Name=FC930187; organism=Citrus clementina; type=EST; length=709bp
GATTGGATTTAGCTCGCGGCTCCTTCACAACTTCTCGAACTCTGCTGCTT
CTACACTTTGAGCTTCAGCAATGGCCTTTGCCAAAGCTCAAAAGTCAAAA
GCTTACTTTAAGCGATATCAAGTTAAGTACAAGAGAAGGCGAGAGGGAAA
GACTGACTATCGGGCTAGGATTCGCCTGATCAACCAAGATAAAAACAAGT
ACAACACGCCAAAGTATCGGTTTGTTGTGCGATTCACCAACAAAGATATC
ACTGCACAAATTATATCTGCCAGCATAGCCGGGGATATAGTCCTTGCATC
TGCTTATGCCCATGAGCTTCCCCGTTATGGTCTTGAGGTGGGCCTCACTA
ATTATGCAGCAGCTTATTGCACTGGACTCCTCTTGGCCCGCCGAGTCCTG
AAAATGCTTGAGATGGATGCTGAGTATGAGGGGCACGTTGAGGCAACAGG
AGAGGACTATTCAGTTGAGCCAACTGAGAACAGGAGGCCTTTCCGTGCCC
TGCTTGATGTTGGTCTTGTGAAAACAACTACTGGTAACCGTGTCTTTGGC
GCTCTTAAGGGTGCATTGGATGGTGGACTTGATATCCCTCACAGTGAGAA
GAGATTTGCTGGATTCAGTAAGGATAGTAAGCAACTTGACGCTGAAGTTC
ACCGTAAATACATCTATTGTGGTCATGTCGCTGCCTACATGAGGACTTTG
ATGGAAGAT
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