FC930222

Overview
NameFC930222
Unique NameFC930222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930222_ssr14 microsatellite FC930222_ssr14:14..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig477 contig Ccv1_Contig477:7..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930222 vs. ExPASy Swiss-Prot
Match: ERI2_XENLA (ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 3 
Query:  504 QEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD 692
            Q F+Y ++IDFE+TC KD     QEIIEFP+V+++   G++E+ F TYV+P  + +LSDFC +
Sbjct:   33 QFFEYLIIIDFESTCWKDGKHSTQEIIEFPAVLLNVSNGEIESEFHTYVQPQEHPILSDFCTE 95
[Close]
BLAST of FC930222 vs. ExPASy Swiss-Prot
Match: ERI2_HUMAN (ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 32/64 (50.00%), Postives = 49/64 (76.56%), Query Frame = 3 
Query:  504 QEFQYFVVIDFEATCDKD-KNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD 692
            Q F Y +VIDFE+TC  D K+ + QEIIEFP+V++++ TGQ+++ FQ YV+P  + +LS+FC +
Sbjct:   32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCME 95
[Close]
BLAST of FC930222 vs. ExPASy Swiss-Prot
Match: ERI3_MOUSE (ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  495 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD 692
            F PQ + YF+V+DFEATCDK +  +PQEIIEFP + ++  T ++E+ F  YV+P  +  L+ FC +
Sbjct:  138 FPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTE 202
[Close]
BLAST of FC930222 vs. ExPASy Swiss-Prot
Match: ERI3_HUMAN (ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  495 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD 692
            F PQ + YF+V+DFEATCDK +  +PQEIIEFP + ++  T ++E+ F  YV+P  +  L+ FC +
Sbjct:  138 FPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTE 202
[Close]
BLAST of FC930222 vs. ExPASy Swiss-Prot
Match: ERI3_BOVIN (ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  495 FQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD 692
            F PQ + YF+V+DFEATCDK +  +PQEIIEFP + ++  T ++E+ F  YV+P  +  L+ FC +
Sbjct:  138 FPPQRYHYFLVLDFEATCDKPQI-HPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTE 202
The following BLAST results are available for this feature:
BLAST of FC930222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ERI2_XENLA1.659e-1149.21ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 P... [more]
ERI2_HUMAN2.830e-1150.00ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=... [more]
ERI3_MOUSE8.235e-1146.97ERI1 exoribonuclease 3 OS=Mus musculus GN=Eri3 PE=... [more]
ERI3_HUMAN8.235e-1146.97ERI1 exoribonuclease 3 OS=Homo sapiens GN=ERI3 PE=... [more]
ERI3_BOVIN8.235e-1146.97ERI1 exoribonuclease 3 OS=Bos taurus GN=ERI3 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionC34005B02EF PostHarvC1 Citrus clementina cDNA clone C34005B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930222 ID=FC930222; Name=FC930222; organism=Citrus clementina; type=EST; length=694bp
GTAACTTACACCATCTCTCTCTCTCTCTCTCGAAATCACACAAAAGGTGG
GTAACAAAGAGAAAGATCTGATGTACTTGATGGTGGATCTTAATTATACA
AAAGATCATGATGGCCCTTGAACATAATGAAGCTATGCAGAGGATGTGTG
AGGCATCCTTGAAAGGCCTCCAGAGCAGGGGAATCCGTTGCAACCTGCAG
TATAATAATGGGAATTCCGTTGAACTTAAAGATGACACCATTGTCCATCC
AGGTGGGGATGCCGGAGAATCAATTCATCAGTTGAGCAGTGAGTTTGTGG
AATATTCAAATGAATTTTATAACAACCCCACCTACCAACATGATTTTGGT
TCATGGTCCACCTTCTATCCTGACTCTCAAAAGGTGCATCACTGCCAAAT
GAATTCTTTTGAGAGCCAATTTTATCCCTTTCCTGTGGAAAATCGGTTTC
AGTTTGCACCATACAATATGCTCACACCAGCTCACCCATATGATTTCCAG
CCTCAAGAATTTCAGTATTTTGTGGTAATAGACTTTGAGGCTACTTGCGA
CAAGGACAAGAATCCTTATCCCCAGGAGATAATCGAGTTTCCATCTGTCA
TTGTGAGTAGTGTAACTGGTCAACTGGAAGCATGTTTTCAGACATATGTG
CGGCCGACTTGCAATCAACTACTGAGTGATTTCTGCAAGGATCT
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