FC930242

Overview
NameFC930242
Unique NameFC930242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930242_ssr210 microsatellite FC930242_ssr210:210..221. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15458 contig Ccv1_Contig15458:99..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930242 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.324e-26
Identity = 58/88 (65.91%), Postives = 66/88 (75.00%), Query Frame = 3
Query:  420 MDSLCCFNAS-YSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFS 680
            M  LCCF +S Y  +V            N G +KFG+SLVKGKANHPMEDYHV+KFV++ G+ELGLFAIYDGHLGE VPAYLQKHLFS
Sbjct:    1 MAKLCCFGSSDYDLVVGRASTSSGKGRNNDGEIKFGYSLVKGKANHPMEDYHVSKFVKIDGNELGLFAIYDGHLGERVPAYLQKHLFS 88          
BLAST of FC930242 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 3
Query:  420 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFS 680
            M   CCF ++   +             + G++K+GFSLVKGKANHPMEDYHVA F+ +Q HELGLFAIYDGH+G++VPAYLQK LFS
Sbjct:    1 MGKFCCFTSASEVVGGQSSSRSGKGRSDEGMIKYGFSLVKGKANHPMEDYHVANFINIQDHELGLFAIYDGHMGDSVPAYLQKRLFS 87          
BLAST of FC930242 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 3
Query:  420 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFS 680
            M  +CC + S +++V              G +K+GFSL+KGK+NH MEDYHVAKF    G+ELGLFAI+DGH G+ V AYLQKHLFS
Sbjct:    1 MPKICC-SRSATQVVVAQKSNSGKGRNGEGGIKYGFSLIKGKSNHSMEDYHVAKFTNFNGNELGLFAIFDGHKGDHVAAYLQKHLFS 86          
BLAST of FC930242 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 3
Query:  420 MDSLCCFNASYSKLVXXXXXXXXXXXXNVGLVK--FGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLFS 680
            M   CCF A  S+                G VK  +GF LV+G  NHPMEDYHVA+  + +G+ELGLFAI+DGHLG+TVPAYLQK+LF+
Sbjct:    1 MSRFCCFGAGCSEFSGHASTSSGKGKGIQGQVKVSYGFYLVRGMTNHPMEDYHVAELAEEKGNELGLFAIFDGHLGDTVPAYLQKNLFA 89          
BLAST of FC930242 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 3
Query:  513 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLF 677
            VK G+ LVKGK+NHPMEDY VA++ Q   H+LGLFAI+DGHLG TVP +L+ HLF
Sbjct:   37 VKHGYHLVKGKSNHPMEDYLVAEYRQEGEHDLGLFAIFDGHLGHTVPDFLRSHLF 91          
BLAST of FC930242 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 3
Query:  513 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLF 677
            +  GF  VKGK++HPMEDY V++F +L+GHELGLFAI+DGHLG  V  YLQ +LF
Sbjct:   34 ITHGFHCVKGKSSHPMEDYVVSEFKKLEGHELGLFAIFDGHLGHDVAKYLQTNLF 88          
BLAST of FC930242 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 3
Query:  513 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLF 677
            V  GF LV+GK+ H MEDYHVA++   + HELGLFAI+DGHLG++VP+YL+ +LF
Sbjct:   69 VTHGFHLVEGKSGHDMEDYHVAEYKYDKSHELGLFAIFDGHLGDSVPSYLKANLF 123          
BLAST of FC930242 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 3
Query:  513 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLF 677
            +  G+  VKGKA HPMEDY V++F ++ GH+LGLFAI+DGHLG  V  YLQ +LF
Sbjct:   30 IAHGYDFVKGKAGHPMEDYVVSEFKKVDGHDLGLFAIFDGHLGHDVAKYLQTNLF 84          
BLAST of FC930242 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 3
Query:  513 VKFGFSLVKGKANHPMEDYHVAKFVQLQGHELGLFAIYDGHLGETVPAYLQKHLF 677
            +  GF LVKGKA H MEDY VAKF ++  +ELGLFAI+DGHL   +P YL  HLF
Sbjct:   40 ITHGFHLVKGKAFHEMEDYVVAKFKEVDDNELGLFAIFDGHLSHEIPDYLCSHLF 94          
The following BLAST results are available for this feature:
BLAST of FC930242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
P2C10_ARATH2.324e-2665.91Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
P2C09_ARATH3.710e-2457.47Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C17_ARATH9.457e-2054.02Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C41_ORYSJ6.130e-1952.81Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
P2C62_ORYSJ4.111e-1567.27Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C58_ARATH3.481e-1463.64Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
P2C44_ORYSJ7.754e-1461.82Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C20_ARATH2.256e-1360.00Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
P2C39_ARATH1.910e-1261.82Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC34005C10EF PostHarvC1 Citrus clementina cDNA clone C34005C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930242 ID=FC930242; Name=FC930242; organism=Citrus clementina; type=EST; length=684bp
GCTCTCGATTCCTTCTTTCTCTTTAATTTGTTTCTCTTGTTCATAAAATA
ATTTTTATTTTTTCTCCTTTACAAAAAGGTTTCAAATCTTCTCCTCTCTC
CCTCTTTTTTTTTTTCCCCCCCTTTCTAATCTCTGTTTATAATAATCTAT
CTCTTTATTCAATTGCTTGCACAAACTAATAAACACAAATTATATTAGAA
AAAAAAGAGGAAGAAGAAGAAACATCAAAAACCCCCCACGGAACAAAGAT
CACCAACAAGGAGCATCAGTTGATTTTGAGCTTTGAATTGATCAACGAGA
GATTGAGAATTCTGGGAGCTGGGCTTGATTTAAAATTTTGGAGTAGAGTT
GTTTACCAAGAGTTTGATGTTGAAATTTTAGTTGAATTAGTTGGAACTGC
TTTGCTGAATTTTTATTTTATGGATAGCTTATGCTGCTTTAATGCTTCGT
ACTCGAAGCTTGTGGGAGGACGCTCGTCATCTACTGGTAAGGGGAGAAGC
AATGTTGGATTAGTCAAGTTTGGTTTCAGCTTGGTAAAAGGGAAAGCTAA
TCATCCCATGGAGGATTATCATGTTGCAAAATTTGTGCAACTTCAAGGTC
ATGAATTAGGGCTGTTTGCTATTTATGACGGCCATTTGGGAGAAACTGTG
CCTGCCTACCTACAAAAGCATTTGTTTTCCACAT
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