FC930248

Overview
NameFC930248
Unique NameFC930248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15108 contig Ccv1_Contig15108:92..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_BETVU (Eukaryotic translation initiation factor 6 (Fragment) OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 7.978e-91
Identity = 166/193 (86.01%), Postives = 177/193 (91.71%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 645
            MATRL FEN+CEVGVFSKLTNA+CLVAIGGSE+FYSTFE ELAD IPVVKTSI G RIIG     NKNGLL PHTTTDQELQHLRN LPD VVVQRIEE+LSALGNCIACND+VAL HTDLD+ETEE+IADVLGVEVF QT+AGNILVGSYC+ +N+GGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI
Sbjct:    1 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSTFETELADYIPVVKTSIAGTRIIGPNVCRNKNGLLVPHTTTDQELQHLRNCLPDSVVVQRIEEKLSALGNCIACNDYVALTHTDLDKETEELIADVLGVEVFGQTIAGNILVGSYCAITNKGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVI 193          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_MOUSE (Eukaryotic translation initiation factor 6 OS=Mus musculus GN=Eif6 PE=1 SV=2)

HSP 1 Score: 326.25 bits (835), Expect = 9.752e-89
Identity = 159/207 (76.81%), Postives = 178/207 (85.99%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            MA R  FEN+CEVG F+KLTNA+CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIGR+CVGN++GLL P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQTVA  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG
Sbjct:    1 MAVRASFENNCEVGCFAKLTNAYCLVAIGGSENFYSVFEGELSDAIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCG 207          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_HUMAN (Eukaryotic translation initiation factor 6 OS=Homo sapiens GN=EIF6 PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.840e-88
Identity = 157/207 (75.85%), Postives = 177/207 (85.51%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            MA R  FEN+CE+G F+KLTN +CLVAIGGSE+FYS FE EL+D IPVV  SI G RIIGR+CVGN++GLL P+ TTDQELQH+RNSLPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQTVA  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG
Sbjct:    1 MAVRASFENNCEIGCFAKLTNTYCLVAIGGSENFYSVFEGELSDTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNSLPDTVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCG 207          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_BOVIN (Eukaryotic translation initiation factor 6 OS=Bos taurus GN=EIF6 PE=2 SV=2)

HSP 1 Score: 321.242 bits (822), Expect = 3.137e-87
Identity = 156/207 (75.36%), Postives = 176/207 (85.02%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            MA R  FEN+CE+G F+KLTN++CLVAIGGSE+FYS FE ELA  IPVV  SI G RIIGR+CVGN++GLL P+ TTDQELQH+RN LPD V ++R+EERLSALGN   CND+VAL H DLDRETEEI+ADVL VEVFRQTVA  +LVGSYC FSN+GGLVHP TSIED DELS+LLQVPLVAGTVNRGSEVI AG+ VNDW AFCG
Sbjct:    1 MAVRASFENNCEIGCFAKLTNSYCLVAIGGSENFYSVFEGELAGTIPVVHASIAGCRIIGRMCVGNRHGLLVPNNTTDQELQHIRNCLPDSVQIRRVEERLSALGNVTTCNDYVALVHPDLDRETEEILADVLKVEVFRQTVADQVLVGSYCVFSNQGGLVHPKTSIEDQDELSSLLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCG 207          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_YEAST (Eukaryotic translation initiation factor 6 OS=Saccharomyces cerevisiae GN=TIF6 PE=1 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 3.468e-86
Identity = 153/207 (73.91%), Postives = 177/207 (85.51%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            MATR  FENS E+GVFSKLTN +CLVA+GGSE+FYS FEAEL D IP+V T+I G RIIGR+  GN+ GLL P  TTDQELQHLRNSLPD V +QR+EERLSALGN I CND+VAL H D+DRETEE+I+DVLGVEVFRQT++GNILVGSYCS SN+GGLVHP TS++D +ELS+LLQVPLVAGTVNRGS V+GAG+ VND+ A  G
Sbjct:    1 MATRTQFENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQEELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTG 207          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_SCHPO (Eukaryotic translation initiation factor 6 OS=Schizosaccharomyces pombe GN=tif6 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.721e-85
Identity = 153/207 (73.91%), Postives = 177/207 (85.51%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            MA R  FENS E+GVFS LTN++ LVA+GGSE+FYS FEAEL DV+PVV T+IGG RIIGRL  GN+ GLL P +TTD ELQHLRNSLPD V +QR++ERLSALGN +ACND+VAL H D++RETEEIIADVL VEVFRQTVAGN+L GSYC+ SN+G LVHP TSI++ DELS+LLQVPLVAGT+NRGS+VIGAGL VNDW AF G
Sbjct:    1 MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIGRLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPDIERETEEIIADVLDVEVFRQTVAGNVLTGSYCALSNQGALVHPRTSIQEQDELSSLLQVPLVAGTINRGSDVIGAGLVVNDWCAFAG 207          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_DROME (Probable eukaryotic translation initiation factor 6 OS=Drosophila melanogaster GN=eIF6 PE=2 SV=3)

HSP 1 Score: 310.457 bits (794), Expect = 5.538e-84
Identity = 152/207 (73.43%), Postives = 177/207 (85.51%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            MA R+ FEN+ ++GVF+KLTN +CLVAIGGSE+FYS FEAEL D IPVV  ++GG RIIGRL VGN+NGLL P++TTD+ELQHLRNSLPD V + R+EERLSALGN IACND+VAL H DLD+ETEEIIADVL VEVFRQT+A N LVGSY   SN+GG+VHP TSI+D DELS+LLQVPLVAGTVNRGSEV+ AG+ VNDW +F G
Sbjct:    1 MALRVQFENNDDIGVFTKLTNTYCLVAIGGSETFYSAFEAELGDTIPVVHANVGGCRIIGRLTVGNRNGLLVPNSTTDEELQHLRNSLPDAVKIYRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIADNSLVGSYAVLSNQGGMVHPKTSIQDQDELSSLLQVPLVAGTVNRGSEVLAAGMVVNDWLSFVG 207          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_DICDI (Probable eukaryotic translation initiation factor 6 OS=Dictyostelium discoideum GN=eif6 PE=3 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.183e-82
Identity = 151/207 (72.95%), Postives = 171/207 (82.61%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            MATRL +ENSC+VGVF KLTN +CLV   GS+ F  T E  LAD IPVV+TSI G RI+GRL  GNKNGLL P+T TDQELQ +RNSLPD VVVQRIEE+ SALGNCIA ND+VAL H D+DRETEEIIADVLGVEVFRQTV+GN+LVG+YC+ +N+G LVHP TSI D DELS+LLQVPLVAGTVNRG+E + AG  VNDWTA  G
Sbjct:    1 MATRLQYENSCDVGVFLKLTNKYCLVGQCGSKQFLHTVENRLADHIPVVETSIAGTRIVGRLSAGNKNGLLLPNTCTDQELQQIRNSLPDDVVVQRIEEKFSALGNCIATNDYVALVHPDIDRETEEIIADVLGVEVFRQTVSGNVLVGTYCALTNQGALVHPMTSIADQDELSSLLQVPLVAGTVNRGNECVAAGCVVNDWTAIVG 207          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_ARATH (Eukaryotic translation initiation factor 6 OS=Arabidopsis thaliana GN=At2g39820 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.336e-80
Identity = 146/209 (69.86%), Postives = 178/209 (85.17%), Query Frame = 1
Query:   67 MATRLMFENS-CEVGVFSKLTNAFCLV-AIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            MATRL ++N+ CE+GVFSKLTNA+CLV A   S +F++ +E++L  VIP+V TSIGG+  IG LCVGNKNGLL  HT TDQELQHLR+SLPD+VVVQRIEE + ALGN IACND+VAL H  L+++TEEII+DVLGVEV+RQT+A N LVGSYCS SN GG+VH +T++E++ EL+ L+QVPLVAGTVNRGS+VI AGLTVNDWTAFCG
Sbjct:    1 MATRLQYDNNNCEIGVFSKLTNAYCLVSATSASANFFTGYESKLKGVIPIVTTSIGGSGTIGSLCVGNKNGLLLSHTITDQELQHLRDSLPDEVVVQRIEEPICALGNAIACNDYVALVHPKLEKDTEEIISDVLGVEVYRQTIANNELVGSYCSLSNNGGMVHSNTNVEEMVELANLVQVPLVAGTVNRGSQVISAGLTVNDWTAFCG 209          
BLAST of FC930248 vs. ExPASy Swiss-Prot
Match: IF6_CAEEL (Eukaryotic translation initiation factor 6 OS=Caenorhabditis elegans GN=eif-6 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 9.170e-71
Identity = 128/207 (61.84%), Postives = 163/207 (78.74%), Query Frame = 1
Query:   67 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLSPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCG 687
            MA R+ +E S +VGVF  LTN++CLV +GG+++FYS  EAEL+D+IPVV TSI   RI+GRL VGN++GLL P+ TTDQELQHLRNSLPD+V ++R++ERLSALGN IACNDHVA+ H ++  ETE+ + +VL VEVFR ++A N LVGSYC  S+ G LV   T  E   E++ LLQ+P+VAGT NRGSE+IGAG+ VNDW AFCG
Sbjct:    1 MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVGRLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAEISAETEQALVEVLKVEVFRVSLAQNSLVGSYCILSSNGCLVAARTPPETQREIAALLQIPVVAGTCNRGSELIGAGMVVNDWVAFCG 207          
The following BLAST results are available for this feature:
BLAST of FC930248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_BETVU7.978e-9186.01Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_MOUSE9.752e-8976.81Eukaryotic translation initiation factor 6 OS=Mus ... [more]
IF6_HUMAN4.840e-8875.85Eukaryotic translation initiation factor 6 OS=Homo... [more]
IF6_BOVIN3.137e-8775.36Eukaryotic translation initiation factor 6 OS=Bos ... [more]
IF6_YEAST3.468e-8673.91Eukaryotic translation initiation factor 6 OS=Sacc... [more]
IF6_SCHPO1.721e-8573.91Eukaryotic translation initiation factor 6 OS=Schi... [more]
IF6_DROME5.538e-8473.43Probable eukaryotic translation initiation factor ... [more]
IF6_DICDI5.183e-8272.95Probable eukaryotic translation initiation factor ... [more]
IF6_ARATH6.336e-8069.86Eukaryotic translation initiation factor 6 OS=Arab... [more]
IF6_CAEEL9.170e-7161.84Eukaryotic translation initiation factor 6 OS=Caen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34005D04EF PostHarvC1 Citrus clementina cDNA clone C34005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930248 ID=FC930248; Name=FC930248; organism=Citrus clementina; type=EST; length=688bp
GATCGCAGGTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATT
CTGTTAATTTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTG
AGGTTGGTGTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATT
GGAGGTTCTGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGT
TATTCCTGTTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGC
TTTGTGTTGGTAACAAAAATGGGCTTCTCTCGCCACACACAACCACAGAC
CAAGAGCTTCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCA
GCGTATTGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATG
ACCATGTTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATT
ATTGCAGATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAA
TATCCTTGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCC
ACCCTCATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAA
GTACCTTTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGC
TGGGTTAACTGTGAATGACTGGACAGCATTCTGTGGGT
back to top