FC930406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL12_CAEBR (Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis briggsae GN=ttll-12 PE=4 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 7.101e-45 Identity = 101/253 (39.92%), Postives = 150/253 (59.29%), Query Frame = 1 Query: 13 VNQFPFESCLVMKHHLAETVQKAHGSPEWFQPTYNLEMHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAIIRLMETGPKICQKYIEFPALF------QGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNY--GRRFNHMNTPDFVRGFEAEH-QVKWLEIHQRVKNTIRSVFQAAAVAHPEMH----SSKSRAMYGVDIMLDSS------FQPKXLEVTY 714 +NQFPFESC+ +K LA + +W+Q TYNL LP+ + + R+++G +N+WI+KPWN+AR ++ +VTDDL+ IIR++ETGPKI +YI P LF KFDLRYIV V ++ P+ ++ + FW+R A N + L ++ + ETHFTV NY + M FV E + ++KW +I + +TIR + AA + P +++SRAMYGVDIML S +P LE+ + Sbjct: 388 INQFPFESCITVKDLLAACAMRDPSKNDWYQLTYNLNTQLPEFVARFQNRQKNGEHNVWIVKPWNLARGMEMAVTDDLNQIIRMVETGPKIVCEYIARPLLFPRPDNGNKVKFDLRYIVFVNAIGPVTAYVYNRFWIRFAINQFQLG--AYDDLETHFTVFNYLDKEKVLQMKCEKFVEIIEKTYPKLKWTQIQADINSTIRKAIEVAA-SEPSPRGVAPNTQSRAMYGVDIMLQESPESPDVIKPTLLEINF 637
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL12_MOUSE (Tubulin--tyrosine ligase-like protein 12 OS=Mus musculus GN=Ttll12 PE=1 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.582e-44 Identity = 103/258 (39.92%), Postives = 146/258 (56.59%), Query Frame = 1 Query: 4 QQYVNQFPFESCLVMKHHLAETVQKAHG--SPEWFQPTYNLEMHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAIIRLMETGPKICQKYIEFPALFQGR-----KFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRR--FNHMNTPDFVRGFEAEH-QVKWLEIHQRVKNTIRSVFQAAAVAHPEM---HSSKSRAMYGVDIMLD--------SSFQPKXLEVTY 714 Q +NQFP E+ L +K LA ++A G P W T+NL LPQ + + R+R G +N WI KPWN+AR++DT VT++L +IIR E+ PK+ KYIE P LF KFD+RYIVL+RS+ PL +F DVFW+R +N P++LD +YE HFTVMNY ++ +F+ FE ++ + W ++ + +FQ A P M SRAMY +D+ML+ QP+ LEV + Sbjct: 348 QVLLNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQHRERRGEDNHWICKPWNLARSLDTHVTNNLHSIIRHRESTPKVVSKYIESPVLFLREDVGNVKFDIRYIVLLRSVRPLRLFAYDVFWLRFSNRPFALD--DLDDYEKHFTVMNYDPDVVLKQVHYNEFIPQFEKQYPEFPWSDVQAEIFKAFTELFQVACAKPPPMGLCDYPSSRAMYAIDLMLNWDNHPDGKRVMQPQILEVNF 603
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL12_CAEEL (Tubulin--tyrosine ligase-like protein 12 OS=Caenorhabditis elegans GN=ttll-12 PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 4.603e-44 Identity = 97/233 (41.63%), Postives = 141/233 (60.52%), Query Frame = 1 Query: 13 VNQFPFESCLVMKHHLAETVQKAHGSPEWFQPTYNLEMHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAIIRLMETGPKICQKYIEFPALF------QGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNY--GRRFNHMNTPDFVRGFE-AEHQVKWLEIHQRVKNTIRSVFQAAA---VAHPEMHSSKSRAMYGVDIML 675 +NQFPFESC+ +K LA + +W+Q TYNL LP+ + + R+ +G +N+WI+KPWN+AR +D +VT+DL+ IIR++ETGPKI +YI P LF KFDLRYIV + + P+ ++ + FW+R A N +SL +F + ETHFTV NY + M +F+ E A +++W E+ + + TIR +AAA + +SRAMYGVDIML Sbjct: 380 INQFPFESCITVKDLLAACAMRDPAKNDWYQLTYNLNTQLPEFVARFQNRELNGQHNVWIVKPWNLARGMDMTVTEDLNQIIRMIETGPKIVCEYIPRPLLFPRPDNGNKVKFDLRYIVFLNGIAPVTAYVYNRFWIRFAINEFSLS--NFEDVETHFTVFNYLDKEKILQMKCENFIETIEKAYPRIQWSEVQKDINLTIRKAIEAAAKEEAPRGVAPNVQSRAMYGVDIML 610
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL12_HUMAN (Tubulin--tyrosine ligase-like protein 12 OS=Homo sapiens GN=TTLL12 PE=1 SV=2) HSP 1 Score: 172.555 bits (436), Expect = 1.934e-42 Identity = 100/255 (39.22%), Postives = 142/255 (55.69%), Query Frame = 1 Query: 13 VNQFPFESCLVMKHHLAETVQKAHG--SPEWFQPTYNLEMHLPQLIGDYYVRKRDGLNNLWILKPWNMARTIDTSVTDDLSAIIRLMETGPKICQKYIEFPALFQGR-----KFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFFEYETHFTVMNYGRR--FNHMNTPDFVRGFEAEH-QVKWLEIHQRVKNTIRSVFQAAAVAHPEM---HSSKSRAMYGVDIMLD--------SSFQPKXLEVTY 714 +NQFP E+ L +K LA ++A G P W T+NL LPQ + + R+R G +N WI KPWN+AR++DT VT L +IIR E+ PK+ KYIE P LF KFD+RYIVL+RS+ PL +F+ DVFW+R +N ++L + +YE HFTVMNY ++ +F+ FE ++ + W ++ + +FQ A P + SRAMY VD+ML QP+ LEV + Sbjct: 356 LNQFPCENLLTVKDCLASIARRAGGPEGPPWLPRTFNLRTELPQFVSYFQQRERWGEDNHWICKPWNLARSLDTHVTKSLHSIIRHRESTPKVVSKYIESPVLFLREDVGKVKFDIRYIVLLRSVRPLRLFVYDVFWLRFSNRAFAL--NDLDDYEKHFTVMNYDPDVVLKQVHCEEFIPEFEKQYPEFPWTDVQAEIFRAFTELFQVACAKPPPLGLCDYPSSRAMYAVDLMLKWDNGPDGRRVMQPQILEVNF 608
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL3E_TETTH (Tubulin glycylase 3E OS=Tetrahymena thermophila GN=TTLL3E PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11 Identity = 59/198 (29.80%), Postives = 96/198 (48.48%), Query Frame = 1 Query: 163 KRDGLNNLWILKPWNMARTIDTSVTDDLS-AIIRLMETGPKICQKYIEFPALFQG--------RKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHSFF-EYETHFTV-MNYGRRFNHMNT----PDFVRGFEAEHQVKWLE-IHQRVKNTIRSVFQAAAVAHPEMHSSKSRAMYGVDIMLDSSFQPKXLEV 708 K G N+WI+KP +R + D L AI ++ +I QKYIE P +FQG +KFD+R VLV S PL+I+ ++R+ + + LD ++ T+F++ N + N T DF+ + + + E + ++K+ + + A A ++ KS +YG DI+LD P LEV Sbjct: 1015 KVSGTKNIWIIKPSANSRGSGIYLVDKLDEAIDSGLKMQARIVQKYIERPLIFQGAKYKKLNNKKFDIRQWVLVTSFKPLKIYFFTSSYLRVCSQSFDLDNIKILSKHLTNFSLNKNSLAKENWDETVVELKDFISYLKEFKNIDYQEDVKPKIKDLVIETIKCA--ADKIVNRKKSFELYGFDILLDEYAHPWLLEV 1210
BLAST of FC930406 vs. ExPASy Swiss-Prot
Match: TTL3D_TETTH (Tubulin glycylase 3D OS=Tetrahymena thermophila GN=TTLL3D PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11 Identity = 58/193 (30.05%), Postives = 98/193 (50.78%), Query Frame = 1 Query: 172 GLNNLWILKPWNMARTIDTSVTDDLSAII---RLMETGPKICQKYIEFPALFQGRKFDLRYIVLVRSMDPLEIFLSDVFWVRLANNPYSLDKHS-FFEYETHFTVMNYGRR--------FNHMNTPDFVRGFEAEHQVKWLEIHQRVKNTIRSVFQAAAVAHPEMHSSKSRAM--YGVDIMLDSSFQPKXLEV 708 G +N+WI+KP ++R + +L II + ME I QKYIE P L + RKFD+R VLV +PL I+ D +VR + + YS S F++ T+ + + +M T + + F E + + Q++K I ++ + + ++ + S+ +M +G DIM+D++F P LEV Sbjct: 681 GEDNIWIVKPAGLSRGRGITCYKNLVEIIDHAKSMEL-QMIVQKYIENPVLIKQRKFDIRIWVLVTDWNPLAIWYFDECYVRFSADSYSTKNLSNKFQHLTNNAISKKKAQQGQDEITLQGNMYTQEQLENFFIETE-GYNVFQQKIKPQIINIIKWSILSCSDTVESRKNSMELFGYDIMIDTNFNPWLLEV 871 The following BLAST results are available for this feature:
BLAST of FC930406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930406 ID=FC930406; Name=FC930406; organism=Citrus clementina; type=EST; length=717bpback to top |