FC930427
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1) HSP 1 Score: 320.857 bits (821), Expect = 4.238e-87 Identity = 150/222 (67.57%), Postives = 176/222 (79.28%), Query Frame = 1 Query: 34 MACRLADSMFLFMGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPVWK 699 MAC LADS+ LF G +Q+P + I SPG+ L L+ K + +R + I AVA+PV P +SA+ RKQ+AE YGFRQ+GEPL ++VT+KDVI+ LPK+VFEIDDVKAWKSVL+SV+SYALGL MISKAPWYLLPLAW WTGTA+TGFFVIGHDCAH+SFS NKL+EDIVGTLAF+PLIYPYEPWRFKH +HHAKTNML DTAWHPVWK Sbjct: 1 MACTLADSLLLFKGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAPVESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPVWK 222
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2) HSP 1 Score: 313.153 bits (801), Expect = 8.838e-85 Identity = 157/226 (69.47%), Postives = 182/226 (80.53%), Query Frame = 1 Query: 34 MACRLADSMFLFMGPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 MA R+ADS+F F GP Q K+ S SPG+ +K LL+KG H+ RC P R I+AVA PVAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+VFEIDD+KA KSVL+SV+SY LGL MI+K+PWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVGTLAFLPL+YPYEPWRFKH +HHAKTNML DTAW PV Sbjct: 1 MASRIADSLFAFTGPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAPVAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMIAKSPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPV 226
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 1.969e-84 Identity = 151/221 (68.33%), Postives = 179/221 (81.00%), Query Frame = 1 Query: 34 MACRLADSMFLFMGPHQ-RPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 MA R+ADS+F F GP Q P + SPG+ ++ LL+KG + + I+AV VPVAPPS D+A+ R+Q+AESYGF+QIG+ LP+NVT+KD++D+LPK+VFEIDDVKAWKSVL+SV+SYALGL MI+KAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKL+EDIVGTLAFLPL+YPYEPWRFKH +HHAKTNML DTAW PV Sbjct: 1 MASRIADSLFAFTGPQQCLPRAPKLASARLSPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMIAKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQPV 221
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1) HSP 1 Score: 283.878 bits (725), Expect = 5.742e-76 Identity = 134/202 (66.34%), Postives = 164/202 (81.19%), Query Frame = 1 Query: 118 SSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQAVAVPVAPPSE----DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPVWK 699 +S G+ +KW+ ++ + H R + +GTR +QAVAVPVA PS D+ + KQ+AE YGF+QIGEPLP++VTM+D+I SLPK+VFEI+D KAW +VL+SV+SYALG+ MI+KAPWYLLPLAWAWTGTA+TGFFVIGHDCAHKSFSKNKL+EDIVGTLAF+PLIYPYEPWRFKH +HH KTNML DTAW P+ K Sbjct: 27 NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLKQLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMK 228
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 2.440e-34 Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 1 Query: 325 NVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHP 690 ++ ++D+I +LPK+ FE KAW SVL+++ + A+G L I PWY LP+ W WTGTA+TG FV+GHDC H+SF+K + + D+VG +AF PLIYP+ WR H HH TN + D AW P Sbjct: 23 DLKLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDP 144
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.211e-33 Identity = 63/121 (52.07%), Postives = 85/121 (70.25%), Query Frame = 1 Query: 337 KDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPVWK 699 +D+I++LP VF D KAW +V+++V LG L I+ APW+LLP+ W +TGTA+TGFFVIGHDC H+SFS+N + D VG + FLP+IYP+ WR H +HH TN + D AW P W+ Sbjct: 26 EDIINTLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPWFLLPVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQP-WR 145
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15 Identity = 44/130 (33.85%), Postives = 61/130 (46.92%), Query Frame = 1 Query: 307 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSS-YALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 G P P N+ D+ ++PK + D ++ V+ V + + L W + PL WA GT FV+GHDC H SFS N L +VG L ++ PY WR H HH D +WHP+ Sbjct: 99 GAPPPFNLA--DIRAAIPKHCWVKDPWRSMSYVVRDVIAVFGLAAAAAYLNNWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHPL 226
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.487e-15 Identity = 54/176 (30.68%), Postives = 78/176 (44.32%), Query Frame = 1 Query: 196 SRGTRFIQAVAVPVAPPSEDSADCRKQ--------IAESYG-FRQIGEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSS-YALGLLMISKAPWYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 S+ + + VAVPV + D R++ + E G F G P P T+ D+ ++PK + + ++ VL V + L + W PL W GT FV+GHDC H SFS N L +VG L ++ PY WR H HH + D +WHP+ Sbjct: 59 SKQSNWALNVAVPVNVSTVSGEDDREREEFNGIVNVDEGKGEFFDAGAPPP--FTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVAAYFNNWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPL 232
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15 Identity = 44/133 (33.08%), Postives = 63/133 (47.37%), Query Frame = 1 Query: 307 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 G P P N+ D+ ++PK + + WKS+ V A+ + + A W + PL W GT FV+GHDC H SFS + L +VG L ++ PY WR H HH + D +WHP+ Sbjct: 49 GAPPPFNLA--DIRAAIPKHCWVKNP---WKSMSYVVRELAIVFALAAGAAYLNNWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPM 176
BLAST of FC930427 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15 Identity = 44/133 (33.08%), Postives = 63/133 (47.37%), Query Frame = 1 Query: 307 GEPLPENVTMKDVIDSLPKKVFEIDDVKAWKSVLLSVSSYALGLLMISKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLLEDIVGTLAFLPLIYPYEPWRFKHGKHHAKTNMLNGDTAWHPV 693 G P P N+ D+ ++PK + + WKS+ V A+ + + A W + PL W GT FV+GHDC H SFS + L +VG L ++ PY WR H HH + D +WHP+ Sbjct: 91 GAPPPFNLA--DIRAAIPKHCWVKNP---WKSLSYVVRDVAIVFALAAGAAYLNNWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPM 218 The following BLAST results are available for this feature:
BLAST of FC930427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930427 ID=FC930427; Name=FC930427; organism=Citrus clementina; type=EST; length=699bpback to top |