FC930667

Overview
NameFC930667
Unique NameFC930667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15201 contig Ccv1_Contig15201:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR3_ARATH (Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=2 SV=2)

HSP 1 Score: 390.193 bits (1001), Expect = 6.043e-108
Identity = 183/232 (78.88%), Postives = 201/232 (86.64%), Query Frame = 3
Query:   60 KLLVLFLFFQISV--------SEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPN 728
            KL     FF +SV        SEIF EE F+ GW+SRWV+SDWKR+EGKAG FKHTAGKW GDPD+KGIQT+ DA+HYAISAKIPEFSNKNRTLVVQYS++ EQDIECGG YIKLLS YVNQK+FGGD PYSLMFGPDICGTQ K LHVI+SYQGQNYPIKK+L+CETDKL HFYTFILRPDASYS+L+DN+ER+ GSMYTDWDILPPRKIK  NAKKP DWDDREYIDDPN
Sbjct:    7 KLSFFCFFFLVSVLTLAPLAFSEIFLEEHFEGGWKSRWVLSDWKRNEGKAGTFKHTAGKWPGDPDNKGIQTYNDAKHYAISAKIPEFSNKNRTLVVQYSVKIEQDIECGGAYIKLLSGYVNQKQFGGDTPYSLMFGPDICGTQTKKLHVIVSYQGQNYPIKKDLQCETDKLNHFYTFILRPDASYSVLVDNKEREFGSMYTDWDILPPRKIKVKNAKKPEDWDDREYIDDPN 238          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.312e-83
Identity = 140/225 (62.22%), Postives = 180/225 (80.00%), Query Frame = 3
Query:   60 KLLVLFLFFQISVS--EIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            K L LFL   ++++  E+FFEERF+DGW +RWV SDWK+ E  AG + +T+GKW+GDP+DKGIQT  D R YAISA+ PEFSNK++TLV Q+S++ EQ ++CGG Y+KLLS+  +QKKFGGD PYS+MFGPDICG   K +H IL+Y   N+ IKKE+ CETD+LTH YT ++RPDA+YSILIDN E+ +GS+YTDWD+LPP+KIK   AKKP DWD++EYI DP
Sbjct:    5 KSLSLFLLSLLAIASAEVFFEERFEDGWENRWVKSDWKKDENTAGEWNYTSGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSSSTDQKKFGGDTPYSIMFGPDICGYSTKKVHAILNYNDTNHLIKKEVPCETDQLTHVYTLVIRPDATYSILIDNVEKQTGSLYTDWDLLPPKKIKDPEAKKPEDWDEKEYIPDP 229          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 8.786e-83
Identity = 138/224 (61.61%), Postives = 177/224 (79.02%), Query Frame = 3
Query:   57 IKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + LL+L   F I+ +++FFEERF+DGW  RWV S+WK+ E  AG + +T+GKW+GD +DKGIQT  D R YAISA+ PEFSNK+ TLV Q+S++ EQ ++CGG Y+KLLS  V+QKKFGGD PYS+MFGPDICG   K +H I +Y   N+ IKK++ CETD+LTH YTFILRPDA+YSILIDN+E+ +GS+YTDWD+LP +KIK   AKKP DWDD+E+I DP
Sbjct:   11 LSLLLLLSLFAIASAKVFFEERFEDGWEKRWVKSEWKKDESMAGEWNYTSGKWNGDANDKGIQTSEDYRFYAISAEFPEFSNKDNTLVFQFSVKHEQKLDCGGGYMKLLSGEVDQKKFGGDTPYSIMFGPDICGYSTKKVHAIFNYNDTNHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNQEKQTGSLYTDWDLLPAKKIKDPEAKKPEDWDDKEFIPDP 234          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.499e-82
Identity = 139/221 (62.90%), Postives = 174/221 (78.73%), Query Frame = 3
Query:   66 LVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            L+LF    I  +E+ FEE+F+DGW  RWV SDWK+ +  AG +KHTAG W GD +DKGIQT  D R YAISA+ PEFSNK++TLV Q+S++ EQ ++CGG Y+KLLS  V+Q KFGGD PYS+MFGPDICG   K +H IL+Y G N+ IKKE+ CETD+LTH YTF+LRPDA+YSILIDN E+ +GS+Y+DWD+LP +KIK  +AKKP DWDD+EYI DP
Sbjct:   11 LILFALVVIVSAEVIFEEKFEDGWEKRWVKSDWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSDDVDQTKFGGDTPYSIMFGPDICGYSTKKVHAILTYNGTNHLIKKEVPCETDQLTHVYTFVLRPDATYSILIDNVEKQTGSLYSDWDLLPAKKIKDPSAKKPEDWDDKEYIPDP 231          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.339e-82
Identity = 139/232 (59.91%), Postives = 179/232 (77.16%), Query Frame = 3
Query:   33 ATRILKMMIKLLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            A R+    +  L+L     I+ +++FFEERF+DGW  RWV S+WK+ E  AG + +T+GKW+GDP+DKGIQT  D R YAISA+ PEFSNK++TLV Q+S++ EQ ++CGG YIKLLS  V+QKKFGGD PYS+MFGPDICG   K +H IL+Y   N  IKK++ CETD+LTH YTFI+RPDA+YSILIDN E+ +GS+Y+DWD+LP +KIK   AKKP DW+D+EYI DP
Sbjct:    2 AFRVPNSSLLSLILLSLLAIASAKVFFEERFEDGWDKRWVTSEWKKDENLAGEWNYTSGKWNGDPNDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYIKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILNYNNTNNLIKKDVPCETDQLTHVYTFIIRPDATYSILIDNLEKQTGSLYSDWDLLPAKKIKDPEAKKPEDWEDQEYIPDP 233          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 304.294 bits (778), Expect = 4.361e-82
Identity = 140/229 (61.14%), Postives = 180/229 (78.60%), Query Frame = 3
Query:   48 KMMIKLLVLFLFFQISVSE--IFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            KM+  L+ L L   ++++   + FEERFDDGW +RWV S+WK+ +  AG +KHTAG W GD +DKGIQT  D R YAISA+ PEFSNK++TLV Q+S++ EQ ++CGG Y+KLLS  V+QKKFGGD PYS+MFGPDICG   K +H IL+Y   N+ IKK++ CETD+LTH YTFILRPDA+YSILIDN E+ +GS+Y+DWD+LPP+KIK  +AKKP DWD++EYI DP
Sbjct:    3 KMIPSLVSLILIGLVAIASAAVIFEERFDDGWENRWVKSEWKKDDNTAGEWKHTAGNWSGDANDKGIQTSEDYRFYAISAEFPEFSNKDKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNEANHLIKKDVPCETDQLTHVYTFILRPDATYSILIDNVEKQTGSLYSDWDLLPPKKIKDPSAKKPEDWDEQEYISDP 231          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.695e-82
Identity = 138/222 (62.16%), Postives = 174/222 (78.38%), Query Frame = 3
Query:   63 LLVLFLFFQISVSEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            + V  L   +  +E+FFEE F+DGW SRWV S+WK+ E  AG + HT+GKW+GD +DKGIQT  D R YAISA+ PEFSNK + LV Q+S++ EQ ++CGG Y+KLLS  V+QKKFGGD PYS+MFGPDICG   K +H IL+Y   N+ IKKE+ CETD+LTH YTFILRPDA+YSILIDN E+ SGS+Y+DWD+LPP+ IK  +AKKP DWD++E+IDDP
Sbjct:   15 ITVFSLLVAVVSAEVFFEESFNDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDANDKGIQTSEDYRFYAISAEFPEFSNKGKNLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTYNDTNHLIKKEVPCETDQLTHVYTFILRPDATYSILIDNVEKQSGSLYSDWDLLPPKTIKDPSAKKPEDWDEKEFIDDP 236          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.821e-81
Identity = 139/210 (66.19%), Postives = 168/210 (80.00%), Query Frame = 3
Query:   99 SEIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            +E+FFEERF+DGW S+WV SDWKR E  AG +  T+GKW+GD +DKGIQT  D R YAISA  PEFSNK +TLV Q+S++ EQ ++CGG Y+KLLS  V+QKKFGGD PYS+MFGPDICG   K +H IL+    N+ IKK++ CETD+LTH YTFILRPDASYSILIDN E+ SGS+YTDWDILPP++IK   AKKP DW+D+EYI DP
Sbjct:   22 AEVFFEERFEDGWESKWVKSDWKRDENMAGEWNFTSGKWNGDANDKGIQTSEDYRFYAISAAFPEFSNKGKTLVFQFSVKHEQKLDCGGGYMKLLSGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHAILTKGETNHLIKKDVPCETDQLTHVYTFILRPDASYSILIDNVEKQSGSVYTDWDILPPKQIKDPEAKKPEDWEDKEYIPDP 231          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.715e-78
Identity = 129/209 (61.72%), Postives = 167/209 (79.90%), Query Frame = 3
Query:  102 EIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            E+FF+E+F+DGW SRWV S+WK+ E  AG + HT+GKW+GDP+DKGIQT  D R YAISA+ PEFSNK++TLV+Q+S++ EQ ++CGG Y+KLL   V+QKKFGGD PYS+MFGPDICG   K +H I +   +N+ IKK++ CETD+L+H YT I+ PDA+Y+ILIDN E+ SGS+Y  WDILPP++IK   AKKP DWDD+EYI DP
Sbjct:   30 EVFFQEKFEDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPEDKGIQTSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGPDICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQSGSIYEHWDILPPKQIKDPEAKKPEDWDDKEYIPDP 238          
BLAST of FC930667 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.347e-74
Identity = 125/209 (59.81%), Postives = 163/209 (77.99%), Query Frame = 3
Query:  102 EIFFEERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQDIECGG-YIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDP 725
            E+FF+E+F+DGW SRWV S+WK+ E  AG + HT+GKW+GD +DKGIQT  D R YAISA+ PEFSNK++TLV+Q+S++ EQ ++CGG Y+KLL   V+QK  GGD  YS++  PDI     K +H IL+  G+N+ IKK++ C+TD+LTH YTFI+RPDA+YSILIDN E+ +GS+Y  WDILPP+KIK   AKKP DWDD+EYI DP
Sbjct:   26 EVFFQEKFEDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDAEDKGIQTSEDYRFYAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKTLGGDTSYSIISRPDISRYSTKKVHTILTKDGKNHLIKKDVPCQTDQLTHVYTFIIRPDATYSILIDNEEKHTGSIYEHWDILPPKKIKDPEAKKPEDWDDKEYIPDP 234          
The following BLAST results are available for this feature:
BLAST of FC930667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CALR3_ARATH6.043e-10878.88Calreticulin-3 OS=Arabidopsis thaliana GN=CRT3 PE=... [more]
CALR_RICCO2.312e-8362.22Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_BETVU8.786e-8361.61Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR1_ARATH1.499e-8262.90Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_PRUAR3.339e-8259.91Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR2_ARATH4.361e-8261.14Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_NICPL5.695e-8262.16Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR_BERST4.821e-8166.19Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_ORYSJ1.715e-7861.72Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR_MAIZE3.347e-7459.81Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34010A03EF PostHarvC1 Citrus clementina cDNA clone C34010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930667 ID=FC930667; Name=FC930667; organism=Citrus clementina; type=EST; length=730bp
AGATAATTGGAGTGAGATTCTTAAAACTACAAGCCACAAGGATCCTAAAG
ATGATGATTAAGCTGCTTGTACTTTTCCTTTTCTTTCAAATTTCAGTTTC
TGAGATCTTTTTTGAAGAGCGATTTGACGATGGATGGCGAAGTCGTTGGG
TAATATCAGACTGGAAACGAAGTGAAGGGAAAGCTGGATATTTTAAGCAC
ACAGCTGGAAAGTGGCATGGTGACCCGGATGATAAAGGTATTCAAACTCA
CACCGATGCAAGACACTATGCCATATCTGCAAAAATACCAGAATTTAGCA
ACAAAAACAGAACATTGGTTGTTCAGTATTCTATACGATTTGAGCAAGAC
ATTGAATGTGGTGGATACATAAAACTTCTTTCTGCATATGTCAATCAAAA
GAAATTTGGCGGAGATGCTCCCTACAGTTTAATGTTTGGACCAGATATAT
GTGGCACGCAAAAGAAGCATCTCCATGTTATCCTCTCCTACCAGGGTCAG
AATTACCCCATCAAAAAGGAGCTGGAATGTGAAACAGACAAGTTGACTCA
TTTCTACACATTTATTCTCAGGCCTGATGCCAGTTATAGTATCCTCATTG
ATAACCGAGAGAGGGATTCTGGTAGCATGTACACGGATTGGGATATTCTT
CCTCCACGGAAAATCAAAGCTGTCAATGCCAAAAAGCCAGCGGATTGGGA
TGATAGAGAATATATTGATGATCCTAATGC
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