FC930669

Overview
NameFC930669
Unique NameFC930669
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8365 contig Ccv1_Contig8365:30..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.949e-72
Identity = 128/151 (84.77%), Postives = 140/151 (92.72%), Query Frame = 3
Query:  249 VVTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            +V V+QDG+G Y +VQ+AID VPL NTCRT+IR+SPG+YRQPVYVPK KN IT AG  PE TVLTWNNTA+KIEHHQA+RVIGTGTFGCGSVIVEGEDF+AENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLH+GKQYLK
Sbjct:    6 MVRVSQDGSGDYCSVQDAIDSVPLGNTCRTVIRLSPGIYRQPVYVPKRKNFITFAGISPEITVLTWNNTASKIEHHQASRVIGTGTFGCGSVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHHGKQYLK 156          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME_PETIN (Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 62/149 (41.61%), Postives = 89/149 (59.73%), Query Frame = 3
Query:  255 TVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            TVA DG+G Y+T++EA+D VP  NT   +I I  GVY++ + +PK+   + L G  P  T +T N +             G  TF   +V V G +FVA+NI FEN+A     QAVA+RV+AD+   YNC+  G+QDTLY+H  +Q+ +
Sbjct:   60 TVALDGSGQYKTIKEALDAVPKKNTEPFIIFIKAGVYKEYIDIPKSMTNVVLIGEGPTKTKITGNKSVKD----------GPSTFHTTTVGVNGANFVAKNIGFENTAGPEKEQAVALRVSADKAIIYNCQIDGYQDTLYVHTYRQFYR 198          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME5_ARATH (Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 62/148 (41.89%), Postives = 90/148 (60.81%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DG+G ++TVQ+A++  P  N  R +I I  G+YR+ V +PK KN I + G     TV+++N +             GT T   G+V VE E F+A+ I F+N+A     QAVAIRV  DR   +NCRF G+QDTLY++ G+Q+ +
Sbjct:  286 VAKDGSGQFKTVQQAVNACPEKNPGRCIIHIKAGIYREQVIIPKKKNNIFMFGDGARKTVISYNRSVKLSP--------GTTTSLSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYR 425          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 60/147 (40.82%), Postives = 83/147 (56.46%), Query Frame = 3
Query:  276 GHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAP-----EGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            G +  +Q+AID +PL N  R +I++  GVY++ V +P  K  IT+ G   E T + W +TA   +    ++    GT+   S  V    FVA+NITF N+ P         QAVA+RV+AD  AF+ CR LG QDTLY H G+ Y K
Sbjct:   94 GDFTKIQDAIDSLPLINFVRVVIKVHAGVYKEKVSIPPLKAFITIEGEGAEKTTVEWGDTAQTPD----SKGNPMGTYNSASFAVNSPFFVAKNITFRNTTPVPLPGAVGKQAVALRVSADNAAFFGCRMLGAQDTLYDHLGRHYYK 236          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.484e-23
Identity = 61/148 (41.22%), Postives = 89/148 (60.14%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DG+G ++TVQ+A+D  P  N  R +I I  G+YR+ V +PK KN I + G     TV+++N +         A   GT T    +V VE E F+A+ + F+N+A     QA AIRV  DR   +NCRF G+QDTLY++ G+Q+ +
Sbjct:  279 VAKDGSGQFKTVQQAVDACPENNRGRCIIYIKAGLYREQVIIPKKKNNIFMFGDGARKTVISYNRSV--------ALSRGTTTSLSATVQVESEGFMAKWMGFKNTAGPMGHQAAAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYR 418          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 58/148 (39.19%), Postives = 86/148 (58.11%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VAQDG+G ++T+ +A+  VP  N    +I +  GVY++ V V K  N +T+ G  P  T  T +     + +        T TFG     V G +F+A++I FEN+A  G  QAVA+RVTAD+  FYNC+  G+QDTLY+   +Q+ +
Sbjct:  134 VAQDGSGQFKTLTDALKTVPPKNAVPFVIHVKAGVYKETVNVAKEMNYVTVIGDGPTKTKFTGS-----LNYADGINTYNTATFG-----VNGANFMAKDIGFENTAGTGKHQAVALRVTADQAIFYNCQMDGFQDTLYVQSQRQFYR 271          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 55/150 (36.67%), Postives = 86/150 (57.33%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + VAQDG+G Y+T+ EA++ VP       ++ I  G+Y++ V V ++   +   G  P+ TV++ + +             G  T+   +V + G+ F+A+NI FEN+A     QAVAIRV AD   FYNC+F G+QDTLY H  +Q+ +
Sbjct:  253 IVVAQDGSGQYKTINEALNFVPKKKNTTFVVHIKEGIYKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKD----------GITTYKTATVAIVGDHFIAKNIAFENTAGAIKHQAVAIRVLADESIFYNCKFDGYQDTLYAHSHRQFYR 392          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 61/148 (41.22%), Postives = 83/148 (56.08%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQY 695
            V VA DG+G+++TV  ++   P   T R +IRI  GVYR+ V V K    I   G     T++T +             V G+ TF   +V V GE F+A +ITF+N+A     QAVA+RV AD  AFYNC  L +QDTLY+H  +Q+
Sbjct:  274 VVVAADGSGNFKTVAASVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNV----------VDGSTTFKSATVAVVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQF 411          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME21_ARATH (Probable pectinesterase/pectinesterase inhibitor 21 OS=Arabidopsis thaliana GN=PME21 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.799e-22
Identity = 55/150 (36.67%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  252 VTVAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            + VAQDG+G Y+T+ EA+  VP       ++ I  G+Y++ V V KT + +   G  P+ T+++ N               G  T+   +V + G  F+A+NI FEN+A     QAVA+RV +D   F+NCRF G+QDTLY H  +Q+ +
Sbjct:  256 IVVAQDGSGQYKTINEALQFVPKKRNTTFVVHIKAGLYKEYVQVNKTMSHLVFIGDGPDKTIISGNKNYKD----------GITTYRTATVAIVGNYFIAKNIGFENTAGAIKHQAVAVRVQSDESIFFNCRFDGYQDTLYTHSHRQFFR 395          
BLAST of FC930669 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22
Identity = 58/148 (39.19%), Postives = 87/148 (58.78%), Query Frame = 3
Query:  258 VAQDGTGHYRTVQEAIDRVPLCNTCRTLIRISPGVYRQPVYVPKTKNLITLAGRCPENTVLTWNNTATKIEHHQAARVIGTGTFGCGSVIVEGEDFVAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLK 701
            VA+DG+G ++T+ EA+   P  N  R +I I  G+Y + V +PK KN I + G     T++T++ +             GT T   G+V VE E F+A+ I F+N+A     QAVA+RV  DR   +NCRF G+QDTLY++ G+Q+ +
Sbjct:  279 VAKDGSGQFKTISEAVMACPDKNPGRCIIHIKAGIYNEQVRIPKKKNNIFMFGDGATQTIITFDRSVKLSP--------GTTTSLSGTVQVESEGFMAKWIGFKNTAGPLGHQAVALRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYR 418          
The following BLAST results are available for this feature:
BLAST of FC930669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PME31_ARATH2.949e-7284.77Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]
PME_PETIN6.025e-2541.61Pectinesterase OS=Petunia integrifolia GN=PPE1 PE=... [more]
PME5_ARATH1.342e-2441.89Pectinesterase 5 OS=Arabidopsis thaliana GN=PME5 P... [more]
PME53_ARATH1.484e-2340.82Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME4_ARATH1.484e-2341.22Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME_MEDSA1.641e-2239.19Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME28_ARATH1.641e-2236.67Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME3_CITSI2.143e-2241.22Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME21_ARATH2.799e-2236.67Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME37_ARATH3.655e-2239.19Probable pectinesterase/pectinesterase inhibitor V... [more]

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Properties
Property NameValue
Genbank descriptionC34010A05EF PostHarvC1 Citrus clementina cDNA clone C34010A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930669 ID=FC930669; Name=FC930669; organism=Citrus clementina; type=EST; length=701bp
GACTTCCCTCCATTTCTCTTCAATCAAAATAAAAACCCAAAATAAAAATT
CAATGAGGAGAAGATGATAAAAAACGCATCAACATCAATAGAGATTCTCT
CTTTACATAAATAAAACCATTTAGCCACAATTACACCTTTTTGTTTAAAT
TTATCTTTGGGTGCGTTATTTCTCAGCAATCGATCCCATCGCCGCCTGCG
CGGTGCGGGTGTGTTAGTTTCTTTTTGGTTTTGAAAATGGCATCATGTGT
GGTGACGGTGGCGCAGGATGGGACGGGGCATTACAGGACGGTGCAGGAGG
CAATAGATAGGGTGCCGCTGTGCAACACTTGTCGGACTCTGATTCGTATA
TCACCTGGGGTTTATAGACAGCCGGTGTATGTGCCAAAGACTAAGAACCT
CATTACACTCGCGGGTCGTTGTCCCGAAAACACCGTACTCACTTGGAATA
ACACCGCCACTAAAATTGAACACCATCAGGCTGCGAGGGTAATTGGGACT
GGGACTTTTGGGTGTGGGAGTGTGATTGTGGAAGGAGAAGATTTCGTTGC
TGAGAATATCACTTTCGAGAATTCTGCACCTGAGGGTTCCGGCCAAGCTG
TGGCAATCAGGGTAACTGCAGACCGATGCGCCTTCTATAACTGCAGGTTT
CTTGGTTGGCAGGATACTCTTTACTTGCATTATGGAAAACAGTATCTGAA
A
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