FC930708

Overview
NameFC930708
Unique NameFC930708
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarvC1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12761 contig Ccv1_Contig12761:1..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930708 vs. ExPASy Swiss-Prot
Match: AMYB_HORVU (Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  498 KGNGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 710
            KGN V V+VM+PLD+V+++N   +   + A LR L  AGV+GVM+DVWWGLVE   P  Y+W  Y  L E+
Sbjct:    6 KGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFEL 76          
BLAST of FC930708 vs. ExPASy Swiss-Prot
Match: AMYB_HORSP (Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  498 KGNGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 710
            KGN V V+VM+PLD+V+++N   +   + A LR L  AGV+GVM+DVWWGLVE   P  Y+W  Y  L E+
Sbjct:    6 KGNYVQVYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFEL 76          
BLAST of FC930708 vs. ExPASy Swiss-Prot
Match: AMYB_MAIZE (Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  504 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 710
            N V V+VM+PLD +T+ NT  ++    A L+ L  AG +GVM+DVWWGLVE  +PG Y+W  Y  + ++
Sbjct:    8 NYVQVYVMLPLDVITVDNTFEKEDETRAQLKKLTEAGADGVMIDVWWGLVEGKEPGVYDWSAYRQVFKL 76          
BLAST of FC930708 vs. ExPASy Swiss-Prot
Match: AMYB_VIGUN (Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 29/69 (42.03%), Postives = 45/69 (65.22%), Query Frame = 3
Query:  504 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 710
            N VPV+VM+PL  V+++N     + +   L  L+ AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++
Sbjct:   11 NYVPVYVMLPLGVVSVNNVFEDPEGLKEQLVQLREAGVDGVMVDVWWGIIEQKGPKQYDWSAYKSLFQL 79          
BLAST of FC930708 vs. ExPASy Swiss-Prot
Match: AMYB_WHEAT (Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  504 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 710
            N V V+VM+PLD V++ N   +   + A L+ L  AGV+GVM+DVWWGLVE   P  Y+W  Y  + ++
Sbjct:    8 NYVQVYVMLPLDVVSVDNKFEKGDEIRAQLKKLTEAGVDGVMIDVWWGLVEGKGPKAYDWSAYKQVFDL 76          
BLAST of FC930708 vs. ExPASy Swiss-Prot
Match: AMYB_TRIRP (Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  504 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 710
            N VPV+VM+PL  + ++N       +   L  L++AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++
Sbjct:   11 NYVPVYVMLPLGVINVNNVFEDPDGLKEQLVQLRAAGVDGVMVDVWWGIIEQKGPKEYDWSAYKSLFQL 79          
BLAST of FC930708 vs. ExPASy Swiss-Prot
Match: AMYB_MEDSA (Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 3
Query:  504 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 710
            N VPV+VM+PL  + ++N       +   L  L++AGV+GVM+DVWWG++E+  P  Y+W  Y  L ++
Sbjct:   11 NYVPVYVMLPLGVINVNNVFEDPDGLKEQLVQLRAAGVDGVMIDVWWGIIEQKGPKEYDWSAYKSLFQL 79          
BLAST of FC930708 vs. ExPASy Swiss-Prot
Match: AMYB_IPOBA (Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 28/75 (37.33%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  486 GLQEKGNGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 710
            G+   GN V ++VM+PL  V   N    K+ ++  L+ +K+ G +GVM+DVWWG++E   P  Y+W  Y +L ++
Sbjct:    6 GVMPIGNYVSLYVMLPLGVVNADNVFPDKEKVEDELKQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQL 80          
BLAST of FC930708 vs. ExPASy Swiss-Prot
Match: AMYB_SOYBN (Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 29/69 (42.03%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  504 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKSAGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 710
            N VPV+VM+PL  V + N       +   L  L++AGV+GVM+DVWWG++E   P  Y+W  Y  L ++
Sbjct:   11 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLFQL 79          
BLAST of FC930708 vs. ExPASy Swiss-Prot
Match: AMYB_ARATH (Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 3
Query:  504 NGVPVFVMMPLDSVTMSNTVNRKKAMDASLRALKS-AGVEGVMMDVWWGLVERDQPGHYNWGGYSDLLEM 710
            N VPV+VM+PL  V + N     + ++  L+ LK  AGV+GVM+DVWWG++E   P  Y+W  Y  L ++
Sbjct:   12 NYVPVYVMLPLGVVNVENVFADPETLETQLKRLKEEAGVDGVMVDVWWGIIESKGPKQYDWTAYKTLFQL 81          
The following BLAST results are available for this feature:
BLAST of FC930708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
AMYB_HORVU2.192e-1450.70Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1[more]
AMYB_HORSP2.192e-1450.70Beta-amylase OS=Hordeum spontaneum GN=BMY1 PE=1 SV... [more]
AMYB_MAIZE2.424e-1346.38Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1[more]
AMYB_VIGUN5.970e-1242.03Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=... [more]
AMYB_WHEAT1.330e-1144.93Beta-amylase OS=Triticum aestivum GN=BMY1 PE=2 SV=... [more]
AMYB_TRIRP1.330e-1140.58Beta-amylase OS=Trifolium repens GN=BMY1 PE=2 SV=1[more]
AMYB_MEDSA1.330e-1140.58Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1[more]
AMYB_IPOBA2.963e-1137.33Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4[more]
AMYB_SOYBN5.054e-1142.03Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3[more]
AMYB_ARATH6.601e-1142.86Beta-amylase OS=Arabidopsis thaliana GN=BMY1 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionC34010D11EF PostHarvC1 Citrus clementina cDNA clone C34010D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930708 ID=FC930708; Name=FC930708; organism=Citrus clementina; type=EST; length=713bp
AGCCCCACTACACAAGCACACGATATCAGACTTTCCATTCAAAAAAACTA
AAGAACGTTGAGCCAAAAAAAAAAAAAAAACTAAAGAACGAAAAAGATAA
AAAACAAAAAAAAAAATTTCTCTGTTATTTTCTCGGGAAAATCAAATCTT
CGCGCAAAATGGCTTTGAATCTAACACACCAGATCGGTACACTAGCTGGA
ACACCAATTCAGATGGACACAGGCGTCGTGTCCGGCGATTCAACGGGGAC
GGTGAACGCATCGGCGGTGTGGAAACCGGTGTCAACAGATTTGCGCTGTG
CGATCCAAAAACCTGATCTGAAGGACACAATGTCGCCACCAGTGAGCCCC
TGCCGGTCGCCGGTACTGTCGAGCATGCGAGCAGATCTGTCAGTGGCATG
CCGCGCATTCGCGACAGAGTCTCCGACGGCGGCAGCGGTGACGGAGTTCT
CCGAGGAGGTTGGCGGCGAGATGTACAAGCAGGGCGGCTTGCAAGAAAAG
GGGAACGGAGTGCCGGTGTTCGTGATGATGCCGCTGGACAGCGTGACGAT
GTCGAATACTGTGAATAGAAAGAAGGCGATGGACGCGAGTCTCAGGGCGT
TGAAGAGCGCGGGAGTGGAAGGAGTTATGATGGACGTGTGGTGGGGCCTG
GTCGAGAGGGACCAGCCCGGCCATTACAATTGGGGTGGCTATTCTGACTT
GCTCGAAATGGCA
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