FC930842

Overview
NameFC930842
Unique NameFC930842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930842_ssr127 microsatellite FC930842_ssr127:127..142. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930842_ssr10 microsatellite FC930842_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15084 contig Ccv1_Contig15084:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_ARATH (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.660e-52
Identity = 106/164 (64.63%), Postives = 131/164 (79.88%), Query Frame = 3
Query:  180 LMALNLQSPAEIKALSFLETTRSNHRLPKLSGGFPLKRKDNATATFGRIVQCSA-----QGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPGNR 656
            +M LN  SPAE KA+SFL+T+R N  +PKLSGGF L+R++     FG+ V+CS      Q PPPAWPGRAV E  R++WDGPKPIS++GSTGSIGTQTLDIVAE+ DKFRVVALAAGSN+TLLADQV+RFKP +VAVRNESL++E+KEALA+++      PG +
Sbjct:    1 MMTLNSLSPAESKAISFLDTSRFNP-IPKLSGGFSLRRRNQGRG-FGKGVKCSVKVQQQQQPPPAWPGRAVPEAPRQSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVRRFKPALVAVRNESLINELKEALADLDYKLEIIPGEQ 162          

HSP 2 Score: 24.2534 bits (51), Expect = 2.660e-52
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  629 KPEILAGEQGVIEAA 673
            K EI+ GEQGVIE A
Sbjct:  154 KLEIIPGEQGVIEVA 168          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_MENPI (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.540e-49
Identity = 99/156 (63.46%), Postives = 121/156 (77.56%), Query Frame = 3
Query:  201 SPAEIKALSFLETTRSNHRLP--KLSGGFPLKRKDNATATFGRIVQCSAQG--PPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPGNR 656
            +P EIK LSFL++++SN+ L   K  GGF  KRKD+   T  + V CSAQ   PPPAWPGRA  E  R TW+GPKPISV+GSTGSIGTQTLDIVAE+ DKFR+VALAAGSN+TLLADQVK FKP++V+V++ESL+ E+KEALA  E+ P   PG +
Sbjct:    2 APTEIKTLSFLDSSKSNYNLNPLKFQGGFAFKRKDSG-CTAAKRVHCSAQSQSPPPAWPGRAFPEPGRMTWEGPKPISVIGSTGSIGTQTLDIVAENPDKFRIVALAAGSNVTLLADQVKAFKPKLVSVKDESLISELKEALAGFEDMPEIIPGEQ 156          

HSP 2 Score: 25.0238 bits (53), Expect = 1.540e-49
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  632 PEILAGEQGVIEAA 673
            PEI+ GEQG+IE A
Sbjct:  149 PEIIPGEQGMIEVA 162          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_ORYSJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.411e-44
Identity = 93/159 (58.49%), Postives = 116/159 (72.96%), Query Frame = 3
Query:  183 MALNLQS-PAEIKALSFLETTRSNHRLPKLSGGFPLKRKDNATATFGRIVQCSAQGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPGNR 656
            MAL + S P ++ A+SFL++ R      +L    P + +D    +  R      Q PPPAWPGRAV E  R++WDGPKPIS++GSTGSIGTQTLDIVAE+ DKFRVVALAAGSN+TLLADQVK FKP++VAVRNESL+DE+KEALA+ +  P   PG +
Sbjct:    1 MALKVVSFPGDLAAVSFLDSNRGG-AFNQLKVDLPFQTRDRRAVSLRRTCCSMQQAPPPAWPGRAVVEPGRRSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTLLADQVKTFKPKLVAVRNESLVDELKEALADCDWKPEIIPGEQ 158          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_MICAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Microcystis aeruginosa (strain NIES-843) GN=dxr PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.756e-21
Identity = 43/75 (57.33%), Postives = 64/75 (85.33%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 635
            K IS+LGSTGSIGTQTLDIV +H DKF+VV LA G+NI LL++Q+++F+PQ+VA+ NES L+++K  +++++ +P
Sbjct:    2 KKISILGSTGSIGTQTLDIVTDHPDKFQVVGLATGNNIQLLSEQIRQFRPQIVAINNESQLEDLKSLISDLDYTP 76          

HSP 2 Score: 23.0978 bits (48), Expect = 9.756e-21
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  632 PEILAGEQGVIEAA 673
            P ILAG++GVIE A
Sbjct:   76 PIILAGKEGVIEVA 89          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_ACAM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acaryochloris marina (strain MBIC 11017) GN=dxr PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.039e-19
Identity = 41/80 (51.25%), Postives = 65/80 (81.25%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 650
            K I++LGSTGSIGTQTLDIVA++ D+FR+V +AAG NI LL+ Q+++F+P++VA+ + + L ++K+A+A+V+  P+   G
Sbjct:    2 KAITLLGSTGSIGTQTLDIVAQYPDQFRIVGMAAGRNIELLSQQIRQFRPEIVAIADPNQLSDLKDAIADVDPQPQLLAG 81          

HSP 2 Score: 24.6386 bits (52), Expect = 1.039e-19
Identity = 9/15 (60.00%), Postives = 13/15 (86.67%), Query Frame = 2
Query:  629 KPEILAGEQGVIEAA 673
            +P++LAGE GV+E A
Sbjct:   75 QPQLLAGEAGVVEVA 89          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_CYAP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7424) GN=dxr PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.105e-18
Identity = 44/75 (58.67%), Postives = 63/75 (84.00%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 635
            K ISVLGSTGSIGTQTLDIVA++ D+F+VV LAAG+N+ LL+ QV +F+P++VA+ N   L+ +KE+L++++ SP
Sbjct:    2 KKISVLGSTGSIGTQTLDIVAQYPDQFQVVGLAAGNNVELLSAQVHQFRPEIVAICNLDHLEVLKESLSSLDYSP 76          

HSP 2 Score: 23.483 bits (49), Expect = 1.105e-18
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  632 PEILAGEQGVIEAA 673
            P IL GEQG++E A
Sbjct:   76 PIILGGEQGIVEVA 89          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_CYAA5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain ATCC 51142) GN=dxr PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.437e-18
Identity = 44/82 (53.66%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPGNR 656
            K IS+LGSTGSIGTQTLDIV ++ D+F+VV LA  SN+ LLA QV++F+P++VA+ +ES L  +K+A+A+++ SP    G +
Sbjct:    2 KKISLLGSTGSIGTQTLDIVNQYPDQFQVVGLATRSNVELLATQVQQFRPEIVAICDESKLGSLKDAIASMDYSPLILAGEQ 83          

HSP 2 Score: 23.8682 bits (50), Expect = 1.437e-18
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  632 PEILAGEQGVIEAA 673
            P ILAGEQGV E A
Sbjct:   76 PLILAGEQGVAEVA 89          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_PROM9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9312) GN=dxr PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.920e-17
Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 626
            K I+VLGSTGSIGTQTL+I +E  DKF+ VAL+AG NITLL +QVK  KP+VVA+ +E+L++++K+ + N++
Sbjct:    2 KYITVLGSTGSIGTQTLEIASEQPDKFKAVALSAGRNITLLTEQVKTHKPEVVAIEDENLIEDLKDNINNLD 73          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_SYNY3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechocystis sp. (strain PCC 6803) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.275e-17
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEE 629
            K IS+LGSTGSIGTQTLDIV  H D F+VV LAAG N+ LLA QV  F+P++VA+R    L+++K A+A + +
Sbjct:    3 KRISILGSTGSIGTQTLDIVTHHPDAFQVVGLAAGGNVALLAQQVAEFRPEIVAIRQAEKLEDLKAAVAELTD 75          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_CYAP4 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxr PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 40/75 (53.33%), Postives = 61/75 (81.33%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 635
            K I++LGSTGSIGTQTLDIVA++ D+FR+V LAAG ++  L  Q+++F+PQ+VA+ +E  LD++K A+A+++  P
Sbjct:    2 KAITLLGSTGSIGTQTLDIVAQYPDQFRIVGLAAGRSLDKLIPQIRQFRPQIVALADEQQLDDLKAAIADLDPQP 76          
The following BLAST results are available for this feature:
BLAST of FC930842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DXR_ARATH2.660e-5264.631-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MENPI1.540e-4963.461-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_ORYSJ1.411e-4458.491-deoxy-D-xylulose 5-phosphate reductoisomerase, c... [more]
DXR_MICAN9.756e-2157.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ACAM11.039e-1951.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP71.105e-1858.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAA51.437e-1853.661-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM91.920e-1758.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNY33.275e-1757.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP44.277e-1753.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34109F04EF PostHarvP1 Citrus clementina cDNA clone C34109F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930842 ID=FC930842; Name=FC930842; organism=Citrus clementina; type=EST; length=674bp
GAATGCTGTTGATGATGATGAATTTTGGTCAACTTCGTACACCGCCACGA
AATACATTTTAAAGTCACTTTCTCCTCTTCTTCTTTCATTATTTCTTTAT
TGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGAGAGAGATAAAAAGA
GGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGGCATTGAATTTGCAG
TCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAACCAGGTCAAA
TCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATA
ATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCT
CCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTG
GGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAA
CTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTG
GCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAG
ATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAA
TCAAGGAGGCTTTGGCTAATGTTGAAGAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCC
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