FC931035

Overview
NameFC931035
Unique NameFC931035
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig890 contig Ccv1_Contig890:7..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.837e-34
Identity = 69/85 (81.18%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            MAS DVE+RCFVGGLAWAT D +L  AFS YG++L+SKIINDRETGRS GFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.400e-34
Identity = 69/82 (84.15%), Postives = 75/82 (91.46%), Query Frame = 1
Query:   82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            A+VE+RCFVGGLAWAT D SL +AFS +GDI +SKIINDRETGRS GFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:    2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.093e-34
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            MAS DVE+RCFVGGLAWAT D +L  AF+ YGD+++SKIINDRETGRS GFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.032e-33
Identity = 67/85 (78.82%), Postives = 78/85 (91.76%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            MAS DVE+RCFVGGLAWAT + SL  AFS +G++++SKIINDRETGRS GFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 63/85 (74.12%), Postives = 74/85 (87.06%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            MA+ADVE+RCFVGGLAWAT++ SL  AF++YG+IL+SK+I DRETGRS GFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = 1
Query:   82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            ADVE+RCFVGGL WAT D SL  AFS YGD+++SKII DRETGRS GFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:    2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 60/82 (73.17%), Postives = 71/82 (86.59%), Query Frame = 1
Query:   82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            ++VE+RCFVGGLAWAT D  L   FS +GD+++SKIINDRE+GRS GFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 59/82 (71.95%), Postives = 72/82 (87.80%), Query Frame = 1
Query:   82 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            ++VE+RCFVGGLAWAT D+ L   FS +G++++SKIINDRETGRS GFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:    2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 1
Query:   73 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            MA+ADVE+RCFVGGLAWAT + +L +AF+ +G +++SK+I DRETGRS GFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC931035 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 1
Query:  136 SSLHEAFSAYGDILESKIINDRETGRSGGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 327
            +SLH AFS YG++LESKII DRET RS GFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of FC931035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
GRP1_SINAL1.837e-3481.18Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA2.400e-3484.15Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP7_ARATH4.093e-3478.82Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL2.032e-3378.82Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE5.532e-3174.12Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU2.102e-3075.61Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH7.989e-3073.17Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA1.043e-2971.95Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SORBI1.780e-2969.41Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI8.853e-2176.56Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC34100G01EF PostHarvP1 Citrus clementina cDNA clone C34100G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931035 ID=FC931035; Name=FC931035; organism=Citrus clementina; type=EST; length=695bp
ATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTAGT
CCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGGT
GCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGAG
GCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACGATCG
CGAGACTGGAAGATCCGGAGGATTTGGATTCGTTACCTTCCGCGATGAGA
AGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGACGGC
CGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCGGTGG
CGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGTGGAC
GCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATACGGA
GGTGGCGGCGGTGGATATGGTGGCCGCCGTGAAGGTGGTTACAGCCGTGA
CGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGTGCTT
CTGATGGCGGTAGCTGGAGGAACTAGGGTTTTGTAGGATAAATTAGGAGT
TGAATGTTACCGTTCCGTGTTTTGATATTTTCCTTGGGTTATGATGTGTC
GTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGTTCTCCCCTG
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