FC931045

Overview
NameFC931045
Unique NameFC931045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15171 contig Ccv1_Contig15171:323..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.848e-79
Identity = 136/232 (58.62%), Postives = 177/232 (76.29%), Query Frame = 3
Query:   27 DLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            ++   NI  DV+QLIG TP+V+LN +++GC A IA K E+ +P  S+KDR   +M+ DAE K LISPGKT ++EPTSGN GI +AF+AA +GYK++LTMP+  SLERRV ++AFGA+L+LTDPAKGM G V KA+E+L +TP+A++LQQF NPAN ++H+ETTGPEIWEDT G++DI V             ++LK QNPN+KI GVEP ESN+L+GGKPGPH I G G GF
Sbjct:   63 EIEGLNIAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPANPKIHYETTGPEIWEDTKGKIDILVAGIGTGGTITGTGRFLKEQNPNIKIIGVEPTESNVLSGGKPGPHKIQGIGAGF 294          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 9.974e-79
Identity = 137/234 (58.55%), Postives = 178/234 (76.07%), Query Frame = 3
Query:   21 PKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            P  +   NI  DVSQLIG+TP+V+LN VS+G  A IA K E  +P  S+KDR   +M++DAE K +I+PGKTT++EPTSGN GI +AF+AA +GYK+ LTMP+  S+ERRV ++AFGA+L+LTDPAKGM G V+KA+E+L+ TP+++MLQQF NPAN ++H+ETTGPEIWEDT G+VDIFV             +YLK +NP V++ G+EP ESNIL+GGKPGPH I G G GF
Sbjct:   59 PSTIEGLNIAEDVSQLIGKTPMVYLNNVSKGSVANIAAKLESMEPCCSVKDRIGYSMIDDAEQKGVITPGKTTLVEPTSGNTGIGLAFIAAARGYKITLTMPASMSMERRVILKAFGAELVLTDPAKGMKGAVEKAEEILKKTPDSYMLQQFDNPANPKIHYETTGPEIWEDTKGKVDIFVAGIGTGGTISGVGRYLKERNPGVQVIGIEPTESNILSGGKPGPHKIQGLGAGF 292          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.761e-75
Identity = 133/230 (57.83%), Postives = 173/230 (75.22%), Query Frame = 3
Query:   21 PKDLPATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGN 710
            P ++   NI  DV+QLIG TP+V+LN + +GC A IA K E+ +P  S+KDR   +M+ DAE K LISPGKT ++EPTSGN GI +AF+AA +GYK++LTMP+  SLERRV ++AFGA+L+LTDPAKGM G V KA+E+L +TP+A++LQQF NPAN ++H+ETTGPEIWEDT G++DI V             +YLK +NPN+KI GVEP ESN+L+GGKPG   I GN
Sbjct:   59 PTEIEGLNIAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPANPKIHYETTGPEIWEDTKGKIDILVAGIGTGGTISGTGRYLKEKNPNIKIIGVEPTESNVLSGGKPG--FIPGN 286          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 282.337 bits (721), Expect = 1.761e-75
Identity = 129/227 (56.83%), Postives = 176/227 (77.53%), Query Frame = 3
Query:   42 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            NI  +VSQLIG+TP+V+LN +++GC A IA K E+ +P  S+KDR   +M+ DAE K  ISPGK+ ++EPTSGN GI +AF+AA +GY+++LTMP+  S+ERRV ++AFGA+L+LTDPAKGM G V+KA+E+L++TP+A+MLQQF NPAN ++H+ETTGPEIW+DT G+VDIFV             +++K +NP  ++ GVEP ES+IL+GGKPGPH I G G GF
Sbjct:  112 NIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGF 338          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.761e-75
Identity = 131/229 (57.21%), Postives = 170/229 (74.24%), Query Frame = 3
Query:   36 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            A+ I +DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S+ERR+ + AFG +L+LTDPAKGM G + KA+E+L  TPN +MLQQF NPAN ++H+ETTGPEIW+ T G++D FV             +YLK QNPNVK+YGVEP ES IL+GGKPGPH I G G GF
Sbjct:    2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTDGKIDGFVSGIGTGGTITGAGKYLKEQNPNVKLYGVEPIESAILSGGKPGPHKIQGIGAGF 230          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.690e-75
Identity = 129/226 (57.08%), Postives = 167/226 (73.89%), Query Frame = 3
Query:   45 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            I  DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S+ERR+ + AFG +L+LTDPAKGM G + KA+E+L  TPN +MLQQF NPAN ++H+ETTGPEIW+ T G++D F+             +YLK QNPNVK+YGVEP ES IL+GGKPGPH I G G GF
Sbjct:    7 IANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTEGKIDGFISGIGTGGTITGAGKYLKEQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGF 232          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.947e-74
Identity = 128/228 (56.14%), Postives = 172/228 (75.44%), Query Frame = 3
Query:   39 TNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            + I +DV++LIG TPLV+LN+V +GC A +A K EM +P +S+KDR   +M+ DAENK LI+PG++ +IEPTSGN GI +AF+AA KGY++++ MP+  SLERR  +RAFGA+L+LTDPA+GM G V+KA+E+   TPN+++LQQF NPAN ++H+ETTGPEIW  + G++D  V             +YLK QNPN+K+YGVEP ES IL+GGKPGPH I G G GF
Sbjct:    6 STIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGKIDALVSGIGTGGTVTGAGKYLKEQNPNIKLYGVEPVESAILSGGKPGPHKIQGIGAGF 233          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 1.947e-74
Identity = 130/229 (56.77%), Postives = 168/229 (73.36%), Query Frame = 3
Query:   36 ATNIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            A+ I +DV++LIG TPLV+LN V+EGC   +A K EM +P +S+KDR   +M+ DAE K LI PG++ +IEPTSGN G+ +AF AA KGYK+++TMP+  S ERR+ + AFG +L+LTDPAKGM G + KA+E+L  TPN +MLQQF NPAN ++H+ETTGPEIW+ T G++D FV             +YLK QN NVK+YGVEP ES IL+GGKPGPH I G G GF
Sbjct:    2 ASRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGAGF 230          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.320e-74
Identity = 130/226 (57.52%), Postives = 173/226 (76.55%), Query Frame = 3
Query:   45 IKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            I +DV++LIG+TPLV+LN V++GC A +A K E  +P +S+KDR   +M+ DAE   LI+PG++ +IEPTSGN GI +AF+AA KGYK+++TMP+  SLERR  +RAFGA+LILTDPAKGM G V+KA+E+ + TPN+++LQQF NPAN +VH+ETTGPEIW+ T G++DIFV             +YLK QNP+VK+ G+EP ES +L+GGKPGPH I G G GF
Sbjct:    8 IAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELILTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIWKGTGGKIDIFVSGIGTGGTITGAGKYLKEQNPDVKLIGLEPVESAVLSGGKPGPHKIQGLGAGF 233          
BLAST of FC931045 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 5.664e-74
Identity = 131/227 (57.71%), Postives = 168/227 (74.01%), Query Frame = 3
Query:   42 NIKRDVSQLIGRTPLVFLNKVSEGCGAYIAVKQEMFQPTASIKDRPAVAMLEDAENKNLISPGKTTIIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPAKGMGGTVKKAQELLESTPNAFMLQQFSNPANTRVHFETTGPEIWEDTMGQVDIFVMXXXXXXXXXXXXQYLKSQNPNVKIYGVEPAESNILNGGKPGPHLITGNGVGF 722
            +I  DV+ LIG TPLV+LNKV +GC A IA K E+ +P +S+KDR   +M+ DAE K LI+PGK+ +IEPTSGN GI +AFMAA KGYK++LTMP+  S+ERR+ ++AFGA+L+LTDP  GM G ++KA EL    PN+++LQQF NPAN ++H+ETTGPEIW+ T G+VDI V             +YLK QNP +KIYGVEP ES IL+GG+PGPH I G G GF
Sbjct:    7 SIASDVTALIGNTPLVYLNKVVDGCEAQIAAKLEIMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYKLILTMPASMSMERRIILKAFGAELVLTDPLLGMKGAIQKADELAAKMPNSYILQQFENPANPKIHYETTGPEIWKATAGKVDILVSGIGTGGTVTGTGKYLKEQNPEIKIYGVEPTESAILSGGRPGPHKIQGIGAGF 233          
The following BLAST results are available for this feature:
BLAST of FC931045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYSKP_SOLTU5.848e-7958.62Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SPIOL9.974e-7958.55Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_CAPAN1.761e-7557.83Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKM_ARATH1.761e-7556.83Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSK1_BRAJU1.761e-7557.21Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK2_BRAJU6.690e-7557.08Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSK_CITLA1.947e-7456.14Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK1_ARATH1.947e-7456.77Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK_SPIOL3.320e-7457.52Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK2_ORYSJ5.664e-7457.71Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34100G11EF PostHarvP1 Citrus clementina cDNA clone C34100G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931045 ID=FC931045; Name=FC931045; organism=Citrus clementina; type=EST; length=725bp
CTCAGAGACTCAGAGATTTGCCCAAGGATCTTCCAGCTACCAACATCAAG
AGAGATGTTTCCCAGCTCATTGGAAGAACCCCGCTTGTGTTTCTTAACAA
AGTCAGTGAAGGATGTGGAGCTTATATTGCTGTCAAGCAAGAAATGTTCC
AACCCACTGCTAGCATCAAGGACAGACCAGCAGTGGCCATGCTCGAAGAT
GCAGAAAATAAAAACTTAATTTCTCCCGGAAAGACCACTATCATAGAGCC
CACGTCAGGGAACATGGGAATAAGCATGGCGTTTATGGCAGCAATGAAAG
GGTATAAGATGGTTCTAACTATGCCCTCTTATACAAGCTTGGAGAGGAGA
GTGACAATGAGAGCATTTGGAGCTGATTTAATCCTCACAGATCCAGCCAA
GGGGATGGGAGGAACTGTTAAGAAGGCTCAAGAACTTTTGGAATCCACAC
CAAATGCTTTCATGCTTCAACAATTTTCAAATCCTGCCAATACGCGGGTT
CATTTTGAGACAACTGGTCCTGAGATATGGGAGGATACGATGGGACAAGT
AGACATCTTTGTAATGGGAATCGGTAGTGGAGGAACAGTCTCTGGTGTCG
GGCAGTATCTTAAATCTCAAAATCCTAATGTTAAGATCTATGGAGTGGAA
CCAGCTGAAAGTAATATATTGAATGGGGGCAAACCAGGTCCTCATCTCAT
TACTGGCAATGGCGTTGGATTCAAA
back to top