FC931050

Overview
NameFC931050
Unique NameFC931050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig495 contig Ccv1_Contig495:768..1475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931050 vs. ExPASy Swiss-Prot
Match: ATL5P_ARATH (RING-H2 finger protein ATL5P OS=Arabidopsis thaliana GN=ATL5P PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 34/97 (35.05%), Postives = 49/97 (50.52%), Query Frame = 2
Query:   80 AFEAAGQEMRGIGQDTAAYHPGLYLTAAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGLP-CAHNFHIECIDEWLRLNVKCPRCR 367
            A  +A Q   G  +     H  ++ TA  +      +  +PK R+     +   C +CL++F VG  VR LP C H FH+ CID+WLR +  CP CR
Sbjct:  122 AMLSAVQSQMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218          
BLAST of FC931050 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 37/107 (34.58%), Postives = 53/107 (49.53%), Query Frame = 2
Query:  146 LYLTAAQREAVEALIQELPKFRL-------------KAVPTDC--------------SECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPN 385
            LY  A Q  A +  I ++PKFR              + + T+C              +EC ICL E+  G E+R LPC H+FH  CID+WL +N +CP C+ ++  N
Sbjct:  279 LYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSGKARGIMTECGTDSPIERSLSPEDAECCICLCEYEDGVELRELPCNHHFHCTCIDKWLHINSRCPLCKFNILKN 385          
BLAST of FC931050 vs. ExPASy Swiss-Prot
Match: YKW3_SCHPO (Uncharacterized RING finger protein P32A8.03c OS=Schizosaccharomyces pombe GN=SPAP32A8.03c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = 2
Query:  239 ECPICLEEFHVGNEVRGLPCAHNFHIECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRTADSERSS--ASSVVATTRYVRTQPSSQSYLVRMQGLLSPVHTGNTRLPNDTDIALQTVE 589
            EC IC+E F + ++V  LPC H FH  CI  WLR+N  C  CR  V PN      ++  +A+    S  A+   +TT        ++S+    Q  LS  H  ++R P D  +  + +E
Sbjct:  395 ECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPVDPNSQQRNNTSTDSANGHNPSNHANPSTSTTNDQGATLRNESFNAASQSNLSSEHGHSSRTPMDDFVDEEPLE 513          
The following BLAST results are available for this feature:
BLAST of FC931050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATL5P_ARATH4.553e-1235.05RING-H2 finger protein ATL5P OS=Arabidopsis thalia... [more]
RING4_ARATH1.730e-1134.58E3 ubiquitin-protein ligase At4g11680 OS=Arabidops... [more]
YKW3_SCHPO8.587e-1132.77Uncharacterized RING finger protein P32A8.03c OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC34100H04EF PostHarvP1 Citrus clementina cDNA clone C34100H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931050 ID=FC931050; Name=FC931050; organism=Citrus clementina; type=EST; length=708bp
ATCTGGCCGGGGAGCTCAGCAGGGGATTCCTCTTTCAGAATATGGGGTTT
TGCTTGACATGATCCGAGTACCAGAGTGGGCATTTGAAGCTGCAGGGCAA
GAGATGAGAGGCATTGGCCAAGACACAGCTGCATATCATCCTGGACTTTA
TCTGACTGCAGCTCAGAGAGAAGCTGTGGAGGCACTCATTCAGGAACTTC
CAAAGTTTAGGTTAAAGGCTGTACCAACTGATTGTAGTGAATGCCCCATC
TGCTTGGAAGAGTTCCATGTGGGAAATGAGGTTCGTGGCCTGCCTTGTGC
TCACAATTTTCACATAGAATGCATTGATGAATGGCTTCGACTGAACGTGA
AGTGTCCTAGGTGCCGATGCTCAGTCTTCCCAAACCTTGACCTCAGTGCT
TTATCCAATCTCCGCACTGCCGATTCCGAAAGGTCATCTGCCAGCAGTGT
GGTGGCAACCACTCGGTATGTAAGAACCCAACCCTCCAGCCAGAGCTATT
TGGTGAGAATGCAGGGTCTGCTCAGCCCAGTCCATACGGGAAATACAAGG
TTGCCCAATGACACAGATATTGCTCTTCAAACTGTTGAGAATGGAGGAGT
GTTGTCTGCAACTCAAAATCGGATTGCCATGGGGCCATTTTCTTCAACTG
GGCGTGTGCTTGTTAATCCTTCAACCCATCTCACACTGAACTGTCAGTCA
GATTCTGC
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