FC931054
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: TPPC1_RAT (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27 Identity = 63/147 (42.86%), Postives = 97/147 (65.99%), Query Frame = 3 Query: 138 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 572 H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G F SF+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE+VVKNPL G ++SELF + LD YVR++ Sbjct: 4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: TPPC1_MOUSE (Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.367e-27 Identity = 63/147 (42.86%), Postives = 97/147 (65.99%), Query Frame = 3 Query: 138 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 572 H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G F SF+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE+VVKNPL G ++SELF + LD YVR++ Sbjct: 4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: TPPC1_HUMAN (Trafficking protein particle complex subunit 1 OS=Homo sapiens GN=TRAPPC1 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.860e-27 Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 3 Query: 138 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 572 H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G F +F+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE VVKNPL G ++SELF + LD YVR++ Sbjct: 4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: TPPC1_BOVIN (Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.860e-27 Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 3 Query: 138 HMMYVFNRNGVCLLYREWNRLLHT-LNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 572 H +Y+F+RNGVCL Y EW+R + ++++KLM+G+LFS++S +KM P + + G F +F+T+ YKL + E+P+GIK+++ T G +R+ L +IY+ LYVE VVKNPL G ++SELF + LD YVR++ Sbjct: 4 HNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG-------------FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: TPPC1_DICDI (Trafficking protein particle complex subunit 1 OS=Dictyostelium discoideum GN=trappc1-1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.415e-24 Identity = 52/142 (36.62%), Postives = 86/142 (60.56%), Query Frame = 3 Query: 144 MYVFNRNGVCLLYREWNRLLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN-LYVEYVVKNPLYAPGTPIRSELFNTSLDQYVR 566 +Y+FN++G C+ Y +WN+ + N +D KL+FG+L+SLK+ P + FH ++T+TYKL + E+ S IK I+++ P DLR+ LK IY+ ++VEYV+KNP+Y GT ++ + F L+ Y++ Sbjct: 5 IYIFNKDGTCIYYEDWNKKKQSQNQSEDQKLLFGMLYSLKAFITSSSPKKID-----------DKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPIYKHGTTVKCDTFINQLNLYLK 135
BLAST of FC931054 vs. ExPASy Swiss-Prot
Match: BET5_SCHPO (Transport protein particle subunit bet5 OS=Schizosaccharomyces pombe GN=bet5 PE=2 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14 Identity = 50/165 (30.30%), Postives = 85/165 (51.52%), Query Frame = 3 Query: 138 HMMYVFNRNGVCLLYREWN----RLLHTLNAQQDH--------KLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLSGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIY-NLYVEYVVKNPLYAPGTP------IRSELFNTSLDQYVRTIA 575 + Y+++R C+ W + TL +Q + KL+FG++FSL+++ K+ + F S+ T+ YKL F E+P+ +++I +T+P+ L L+ IY LYVE+VVK+PLY P I E+F +LD++VRT++ Sbjct: 4 YAFYIYSRKCECVFAHRWKPSDRNSMETLVSQLEQNSIEDDMEKLIFGVVFSLRNMVKKITADQDQ---------------FMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPPSAEEGGINCEIFRITLDRFVRTLS 153 The following BLAST results are available for this feature:
BLAST of FC931054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC931054 ID=FC931054; Name=FC931054; organism=Citrus clementina; type=EST; length=726bpback to top |