FC931062

Overview
NameFC931062
Unique NameFC931062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig679 contig Ccv1_Contig679:252..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931062 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.716e-27
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  454 IFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS 636
            I +ESF LTF+AEWGDR+QIATIALA   NA GV+ GA +GHTIC  +AV+GG  +A +IS
Sbjct:  121 IVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRIS 181          

HSP 2 Score: 60.4622 bits (145), Expect = 2.716e-27
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   84 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFWAAVTIHSLDVRSKIRSEE 368
            AF A   +I VSE+GD+TF IA ++AMR+P+  VL G +  L  MT+LS  +G+I   L +R + N A   L+  F   +   +  +++    EE
Sbjct:    4 AFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTR-YINYAEVALFLIFGTKLLWDARRIKATANLEE 97          

HSP 3 Score: 20.4014 bits (41), Expect = 2.716e-27
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:  653 IGGLLFFAFPV 685
            IGGLLF+ F V
Sbjct:  188 IGGLLFYLFAV 198          
BLAST of FC931062 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  451 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS 636
            PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A KIS
Sbjct:  234 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKIS 295          

HSP 2 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 3
Query:   63 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 311
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +T L+A F
Sbjct:   89 ANLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG-YATTVIPRVYTYYVSTALFAIF 170          
BLAST of FC931062 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  451 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS 636
            PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A KIS
Sbjct:  234 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKIS 295          

HSP 2 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 3
Query:   63 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 311
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +T L+A F
Sbjct:   89 TNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG-YATTVIPRVYTYYVSTALFAIF 170          
BLAST of FC931062 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.443e-17
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  451 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS 636
            PIF+++  LTFLAEWGDRSQ+ TI LA  ++  GVAVG T+GH +CT LAV+GG M+A KIS
Sbjct:  235 PIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKIS 296          

HSP 2 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 3
Query:   63 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 311
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +TVL+A F
Sbjct:   89 TNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFG-YATTVIPRVYTYYVSTVLFAIF 170          
BLAST of FC931062 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.512e-16
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 1
Query:  451 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKI 633
            P+F+++F LTF++EWGDRSQIATIA+A   N  GV +GA +GH  CT+LAV+ G  +++KI
Sbjct:  201 PLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKI 261          

HSP 2 Score: 24.2534 bits (51), Expect = 8.512e-16
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  650 YIGGLLFFAFPVSYF 694
            +IGG+LF AF + YF
Sbjct:  268 FIGGILFIAFGLVYF 282          

HSP 3 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 3
Query:   84 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFWAAVTIHSLDV 344
            + I S SMI   EIGD+TFI+AAL+A  + + TV +G+ SALF+MT+L   LG   P L  RK T+    VL+  F   + + + +V
Sbjct:   49 SLIFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEV 135          
BLAST of FC931062 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 39/95 (41.05%), Postives = 59/95 (62.11%), Query Frame = 3
Query:   84 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFWAAVTIHSLDVRSKIRSEE 368
            +F+ S SMI +SEIGD+TF+IAALMAMRH +  V S A ++L +MT+LS  +G      +S ++T   A +L+  F   +T+  L++      EE
Sbjct:   41 SFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEE 135          

HSP 2 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  451 PIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS 636
            P++++ F++ FL E GDRSQI+ IA+AT  +   V  GA IGH IC+ LAVVGG +LA++IS
Sbjct:  191 PVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRIS 252          
The following BLAST results are available for this feature:
BLAST of FC931062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y615_SYNY32.716e-2763.93UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
TM165_RAT8.443e-1762.90Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE8.443e-1762.90Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
TM165_HUMAN8.443e-1762.90Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
YD68_SCHPO8.512e-1655.74UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
YB37_YEAST6.213e-1241.05UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionC34101A04EF PostHarvP1 Citrus clementina cDNA clone C34101A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931062 ID=FC931062; Name=FC931062; organism=Citrus clementina; type=EST; length=729bp
GTGGCTTGATTTTATCGCAAGACCTTGAGAATGAACTCGGTACGATCCCT
TTGAATATCGACTCGGGTCTTGGAGTTTTTGATGCCTTCATCGCAAGTTT
TTCGATGATCATTGTTAGTGAGATTGGAGATGAGACTTTCATAATAGCAG
CACTTATGGCAATGCGTCATCCCAAGTCAACCGTTTTGTCGGGTGCGCTC
TCTGCTCTGTTTGTTATGACTGTACTTTCTACTGGACTAGGTAGGATTGT
GCCGAACTTGATATCAAGGAAGCATACAAATAGTGCTGCTACAGTTCTGT
ATGCATTTTTTTGGGCTGCGGTTACTATACATAGCTTGGATGTCAGATCC
AAAATCAGGTCAGAAGAAAGAAATGGAGGAGGTGGAGGAGAAACTTGAGT
CAGGGCAAGGGAAGACAACCTTCCGCCGTTTCTTCTCAAGATTCTGTACT
CCCATATTTCTAGAGTCATTTATTTTGACATTCCTGGCAGAGTGGGGAGA
TCGTAGCCAGATAGCCACAATTGCTTTGGCAACACACAAAAATGCCGTTG
GAGTTGCAGTTGGGGCCACAATAGGACACACAATCTGTACATCACTGGCC
GTGGTGGGTGGGAGCATGCTGGCGTCAAAGATTTCACACGTACGGTTGCT
ACATAGGAGGCTTGCTCTTCTTTGCTTTTCCTGTCTCATACTTTACCCTC
CCTGTAGTTGAATCGTAGCTAACTCATCT
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