FC931229

Overview
NameFC931229
Unique NameFC931229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14035 contig Ccv1_Contig14035:226..959. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931229 vs. ExPASy Swiss-Prot
Match: Y3028_ARATH (Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.710e-25
Identity = 83/227 (36.56%), Postives = 115/227 (50.66%), Query Frame = 1
Query:   67 SSTTIISKCTVRP---DQKSRIKPLRLSVSDLPMLSCQYIQKGVLLTAPPFSITHFVSLLRQSLSVALSHFPALAGRFST-----DSDGHISILCNDTGVDFIHAKATFLSVNSLLPPI-DVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELADGVFVGCTVNHAVTDGTSFWHFFNTFAEITKGAKKISKVPDFSRDTVFDSPAVLKFPAGGPAVTFSGAVPLRE 720
            +  T IS   VRP   +Q+ R K + L+  DL +L   Y Q+G+L   P    THF+S LR SLS AL  +   AGR +      D      I C+ +G  FIHA +  +SV+ LL P   VPD F+ F+  +   S  G   PL A+QVTE+ DGVF+G   NH V DG S W+FF T+++I    ++ +  P   +    D    + FP   P      + P RE
Sbjct:    2 ADVTFISSSIVRPQIINQEGREK-IHLTPFDLNLLYVDYTQRGLLFPKPDPE-THFISRLRTSLSSALDIYFPFAGRLNKVENHEDETVSFYINCDGSGAKFIHAVSDSVSVSDLLRPDGSVPDFFRIFYPMNGVKSIDGLSEPLLALQVTEMRDGVFIGFGYNHMVADGASIWNFFRTWSKICSNGQRENLQPLALKGLFVDG---MDFPIHIPVSDTETSPPSRE 223          
BLAST of FC931229 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 76/213 (35.68%), Postives = 106/213 (49.77%), Query Frame = 1
Query:   79 IISKCTVRPDQKSR-IKPLRLSVSDLPMLSCQYIQKGVL--------LTAPPFSITHFVSLLRQSLSVALSHFPALAGRFSTDSDG--HISILCNDT---GVDFIHAKATFLSVNSLLPPIDVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELADGVFVGCTVNHAVTDGTSFWHFFNTFAEITKGAKKISKVPDFSRDTVFDSPAVLKFPA 675
            I+SK  V+P +     K   L+  DLP L+  Y QK +L        L  P F     V  L+  L + L  F  LAG+ + D +G   +     D+   GV+F  A A  ++V+ L    D    FKE   ++  ++  G  RPL AVQVT+L DG+ +G   NHAV DGTS WHF +++AEI +GA+ IS  P   R    D+   L   A
Sbjct:    5 IMSKTHVKPTKPVLGKKQFHLTTFDLPYLAFYYNQKFLLYKFQNLLDLEEPTFQ-NEVVENLKDGLGLVLEDFYQLAGKLAKDDEGVFRVEYDAEDSEINGVEFSVAHAADVTVDDLTAE-DGTAKFKELVPYNGILNLEGLSRPLLAVQVTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEICRGAQSISTQPFLDRSKARDTRVKLDLTA 215          
The following BLAST results are available for this feature:
BLAST of FC931229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3028_ARATH1.710e-2536.56Uncharacterized acetyltransferase At3g50280 OS=Ara... [more]
DCR_ARATH5.694e-2135.68BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34102H08EF PostHarvP1 Citrus clementina cDNA clone C34102H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931229 ID=FC931229; Name=FC931229; organism=Citrus clementina; type=EST; length=734bp
GAAAACTCATCACCATCATTCATAGATATTGGTTGAAGGGAATAAAAGCA
AGCAAACATGCCTTCTTCTTCAACCACAATCATCTCCAAATGCACAGTGC
GCCCCGATCAAAAATCAAGAATCAAGCCTCTCAGACTCTCTGTTTCAGAC
CTCCCCATGCTCTCTTGCCAGTACATTCAAAAAGGCGTCCTCCTCACGGC
CCCTCCATTTTCAATCACCCATTTCGTTTCATTGCTCAGGCAATCACTTT
CGGTCGCTCTTTCCCACTTCCCCGCCCTCGCCGGCCGCTTCTCCACCGAC
TCCGACGGCCACATCAGCATCCTCTGCAACGATACGGGCGTCGACTTCAT
TCACGCCAAGGCCACTTTCCTTTCCGTCAACAGCCTCCTCCCGCCCATCG
ACGTCCCCGATTCTTTCAAGGAGTTCTTCGCTTTTGACAGAACCATCAGC
TACACCGGCCATGTCAGGCCCTTAGCCGCCGTCCAAGTGACGGAGCTAGC
TGACGGCGTCTTCGTCGGTTGTACGGTCAATCACGCCGTCACTGACGGTA
CCTCCTTTTGGCACTTCTTTAATACATTCGCCGAAATCACTAAAGGCGCC
AAGAAAATCTCGAAAGTTCCCGACTTCTCCCGCGACACCGTTTTTGACTC
GCCGGCGGTGCTCAAGTTCCCCGCCGGTGGCCCCGCTGTTACTTTCTCCG
GCGCGGTGCCGTTGCGTGAGAGAATCTCCATTTC
back to top