FC931269

Overview
NameFC931269
Unique NameFC931269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931269_ssr220 microsatellite FC931269_ssr220:220..234. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931269_ssr507 microsatellite FC931269_ssr507:507..524. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931269_ssr684 microsatellite FC931269_ssr684:684..695. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931269_ssr744 microsatellite FC931269_ssr744:744..758. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC931269 vs. ExPASy Swiss-Prot
Match: WNK11_ARATH (Probable serine/threonine-protein kinase WNK11 OS=Arabidopsis thaliana GN=WNK11 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.321e-25
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 DQEEGIEVAWNQVRLSHFSEDPVLVNRLHSEVQLLRTLKNKYIIVCYSVWLDDQHNTLNFITEVCTSGNLRTYKKKKK 234
            DQEEGIEVAWNQV+L  FS+DP +  RL+SEV+LL+ LKN  II  Y VW D+++NTLNFITE+CTSGNLR Y+KK +
Sbjct:   50 DQEEGIEVAWNQVKLRCFSDDPAMTERLYSEVRLLKNLKNSNIITLYKVWRDERNNTLNFITEICTSGNLREYRKKHR 127          
BLAST of FC931269 vs. ExPASy Swiss-Prot
Match: WNK5_ORYSJ (Probable serine/threonine-protein kinase WNK5 OS=Oryza sativa subsp. japonica GN=WNK5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 DQEEGIEVAWNQVRLSHFSE-DPVLVNRLHSEVQLLRTLKNKYIIVCYSVWLDDQHNTLNFITEVCTSGNLRTYKKKKK 234
            DQEEGIEVAWN+VRL   ++ DP +V RLH+EV+LLR+L +++II  + VWLD     LNFITEVCTSG+LR Y+ + +
Sbjct:   74 DQEEGIEVAWNRVRLRALADRDPAMVERLHAEVRLLRSLHHEHIIGFHKVWLDRDAGVLNFITEVCTSGSLREYRDRHR 152          
BLAST of FC931269 vs. ExPASy Swiss-Prot
Match: WNK3_ARATH (Probable serine/threonine-protein kinase WNK3 OS=Arabidopsis thaliana GN=WNK3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.824e-18
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 DQEEGIEVAWNQVRLSH---FSEDPVLVNRLHSEVQLLRTLKNKYIIVCYSVWLDDQHNTLNFITEVCTSGNLRTYKKKKK 234
            DQ EGIEVAWNQV+L      SED   ++RL+SEV LL+TLK+K II  Y+ W+D QH T+N ITEV TSGNLR Y+KK K
Sbjct:   41 DQLEGIEVAWNQVKLDDKFCSSED---LDRLYSEVHLLKTLKHKSIIKFYTSWIDHQHMTINLITEVFTSGNLRQYRKKHK 118          
BLAST of FC931269 vs. ExPASy Swiss-Prot
Match: WNK7_ARATH (Probable serine/threonine-protein kinase WNK7 OS=Arabidopsis thaliana GN=WNK7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 42/81 (51.85%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    1 DQEEGIEVAWNQVRLSHFSEDPVLVNRLHSEVQLLRTLKNKYIIVCYSVWLDDQHNTLNFITEVCTSGNLRTYKKKKKIAN 243
            D+ +GIEVAWNQVR+    + P  + RL+SEV+LL++LK+K II  Y+ W+DD++ T+N ITE+ TSG+LR Y+KK +  N
Sbjct:   47 DEVDGIEVAWNQVRIDDLLQSPDCLERLYSEVRLLKSLKHKNIIRFYNSWIDDKNKTVNIITELFTSGSLRQYRKKHRKVN 127          
BLAST of FC931269 vs. ExPASy Swiss-Prot
Match: WNK6_ARATH (Probable serine/threonine-protein kinase WNK6 OS=Arabidopsis thaliana GN=WNK6 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 DQEEGIEVAWNQVRLSHFSEDPVLVNRLHSEVQLLRTLKNKYIIVCYSVWLDDQHNTLNFITEVCTSGNLRTYKKKKKIAN 243
            D+ +GIEVAWNQVR+    + P  + RL+SEV+LL++LK+  II  Y+ W+DD++ T+N ITE+ TSG+LR Y+KK +  N
Sbjct:   47 DEVDGIEVAWNQVRIDDVLQSPNCLERLYSEVRLLKSLKHNNIIRFYNSWIDDKNKTVNIITELFTSGSLRHYRKKHRKVN 127          
BLAST of FC931269 vs. ExPASy Swiss-Prot
Match: WNK2_ORYSJ (Probable serine/threonine-protein kinase WNK2 OS=Oryza sativa subsp. japonica GN=WNK2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 DQEEGIEVAWNQVRLSHFSEDPVLVNRLHSEVQLLRTLKNKYIIVCYSVWLDDQHNTLNFITEVCTSGNLRTYKKKKK 234
            DQ EG+EVAWNQ+++     +   + RL SEV+LL+TLK+K II  Y+ WLD ++N +NFITEV TSG LR Y+ K K
Sbjct:   47 DQLEGLEVAWNQIKVGDILRNNDDLERLRSEVRLLKTLKHKNIIKFYNSWLDKKNNNINFITEVFTSGTLRQYRIKHK 124          
BLAST of FC931269 vs. ExPASy Swiss-Prot
Match: WNK9_ARATH (Probable serine/threonine-protein kinase WNK9 OS=Arabidopsis thaliana GN=WNK9 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 DQEEGIEVAWNQVRLSHFSEDPVLVNRLHSEVQLLRTLKNKYIIVCYSVWLDDQHNTLNFITEVCTSGNLRTYKKKKKIAN 243
            D+ +GIEVAWNQV+L  F + P  + RL+ E+ LL+TLK+K I+  Y+ W+D  +  +NF+TE+ TSG LR Y+ K K  N
Sbjct:   44 DEYQGIEVAWNQVKLYDFLQSPQELERLYCEIHLLKTLKHKSIMKFYASWVDTDNRNINFVTEMFTSGTLRQYRLKHKRVN 124          
BLAST of FC931269 vs. ExPASy Swiss-Prot
Match: WNK1_ARATH (Serine/threonine-protein kinase WNK1 OS=Arabidopsis thaliana GN=WNK1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.006e-15
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 DQEEGIEVAWNQVRLSHFSEDPVLVNRLHSEVQLLRTLKNKYIIVCYSVWLDDQHNTLNFITEVCTSGNLRTYKKKKKIAN 243
            D+ EGIEVAWNQV+L  F + P  + RL+ E+ LL+TLK+K I+  Y+ W+D  +  +NF+TE+ TSG LR Y+ + K  N
Sbjct:   43 DEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTELFTSGTLRQYRLRHKRVN 123          
BLAST of FC931269 vs. ExPASy Swiss-Prot
Match: WNK4_ORYSJ (Probable serine/threonine-protein kinase WNK4 OS=Oryza sativa subsp. japonica GN=WNK4 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.927e-15
Identity = 37/76 (48.68%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    1 DQEEGIEVAWNQVRLSHFSEDPVLVNRLHSEVQLLRTLKNKYIIVCYSVWLDDQHNTLNFITEVCTSGNLRTYKKK 228
            D+ EGIEVAW+QV +    + P  + RL+SEV LL++LK++ ++  Y+ W+DDQ  T+N ITE+ TSG+LR Y++K
Sbjct:   44 DEVEGIEVAWSQVEIDEVMQSPDNLERLYSEVHLLKSLKHENVMKFYNYWVDDQKKTINVITELFTSGSLRQYRQK 119          
BLAST of FC931269 vs. ExPASy Swiss-Prot
Match: WNK4_ARATH (Probable serine/threonine-protein kinase WNK4 OS=Arabidopsis thaliana GN=WNK4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 DQEEGIEVAWNQVRLSHFSEDPVLVNRLHSEVQLLRTLKNKYIIVCYSVWLDDQHNTLNFITEVCTSGNLRTYKKK 228
            D++ GIEVAW+QV+L       V + RL+SEV LL TL +K II  Y+ W+D  ++TLNFITE+ TSG LR YK K
Sbjct:   38 DEKLGIEVAWSQVKLKEVLRSSVDLQRLYSEVHLLSTLNHKSIIRFYTSWIDVHNHTLNFITELFTSGTLRQYKNK 113          
The following BLAST results are available for this feature:
BLAST of FC931269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
WNK11_ARATH5.321e-2566.67Probable serine/threonine-protein kinase WNK11 OS=... [more]
WNK5_ORYSJ4.363e-1958.23Probable serine/threonine-protein kinase WNK5 OS=O... [more]
WNK3_ARATH4.824e-1861.73Probable serine/threonine-protein kinase WNK3 OS=A... [more]
WNK7_ARATH8.229e-1851.85Probable serine/threonine-protein kinase WNK7 OS=A... [more]
WNK6_ARATH5.334e-1750.62Probable serine/threonine-protein kinase WNK6 OS=A... [more]
WNK2_ORYSJ4.515e-1653.85Probable serine/threonine-protein kinase WNK2 OS=O... [more]
WNK9_ARATH5.897e-1648.15Probable serine/threonine-protein kinase WNK9 OS=A... [more]
WNK1_ARATH1.006e-1548.15Serine/threonine-protein kinase WNK1 OS=Arabidopsi... [more]
WNK4_ORYSJ2.927e-1548.68Probable serine/threonine-protein kinase WNK4 OS=O... [more]
WNK4_ARATH8.515e-1553.95Probable serine/threonine-protein kinase WNK4 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34103C12EF PostHarvP1 Citrus clementina cDNA clone C34103C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931269 ID=FC931269; Name=FC931269; organism=Citrus clementina; type=EST; length=760bp
GATCAGGAGGAAGGTATAGAGGTGGCATGGAATCAGGTGAGATTGAGTCA
TTTCAGTGAAGATCCTGTGCTCGTGAATAGGCTTCATTCAGAAGTTCAGT
TGCTGAGAACGTTGAAGAACAAGTATATCATTGTGTGTTATAGTGTATGG
TTGGATGACCAGCATAACACACTGAACTTTATCACTGAGGTGTGCACGTC
AGGAAACCTGAGAACTTACAAGAAGAAGAAGAAGATAGCAAACAACTCTT
TGTATTGAAAAGAAAAGAAGAGGAACAGTCATTTTAAGGGAAAATGTCAG
GAGTTATTCACAAGATCGGAGAAGCCCTTCACATGGGAGGAGGGCAAAAG
GAGGAGGACAAGCACAAGGGTGAGCACCATAGTGGGGACCACCACACTAC
TGATGTTCACCATCAGCAGCAGTATCACGGCGGCGAACACAAGGAAGGCT
TGGTGGACAAGATCAAGCAGCAGATCCCCGGTGTCGGTACTACTGATGTT
CACCATCAGCAGCAGCAGCAGCAGTATCACGGCGGGGAACACAGGGAGGG
CGAACACAAGGAGGGCTTGGTGGACAAGATCAAGCAGAAGATCCCCGGTG
TTGGCGGCGGCGAGGGCGCCGCCCACGGTGAAGAGAAGAAGAAAAAGAAG
AAGGAGAAGAAGAAGCACGAGGACGGACACGAGAGCAGCAGCAGCAGTGA
CAGCGATTAAATTAATGAAACTTTATGTGACGCATCACATCAGCATCATC
ATCATCATCT
back to top