FC931434

Overview
NameFC931434
Unique NameFC931434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931434_ssr134 microsatellite FC931434_ssr134:134..148. BLAST: Citrus ESTs to Prunus persica proteins V1
FC931434_ssr215 microsatellite FC931434_ssr215:215..229. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15325 contig Ccv1_Contig15325:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931434 vs. ExPASy Swiss-Prot
Match: REM16_ARATH (B3 domain-containing protein REM16 OS=Arabidopsis thaliana GN=REM16 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.848e-39
Identity = 74/141 (52.48%), Postives = 95/141 (67.38%), Query Frame = 1
Query:  256 MGEACNECRSWEEEIYWNHFQCIHFIQYLHTGFEYQLAIPEKVARNLRTKLPVTVSLKAPSGFTWVVGITTRDH-TLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEKAVSYFVKKCGHTEHSNRRET 675
            M E C +C  WEEE+YW HFQ +HF Q L  GF  +L IP K + + + KLP  V+LK+PSG T+ VG+   D  T+ F  GW +FVKDH L END+L FK++G S F+VL+FDGQ+ CEK  SYFV+KCGH E +    T
Sbjct:    1 MEENCEDCMKWEEELYWTHFQTLHFTQLLLPGFHNRLVIPRKFSTHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFGWDKFVKDHSLEENDLLVFKFHGVSEFEVLVFDGQTLCEKPTSYFVRKCGHAEKTKASHT 141          
BLAST of FC931434 vs. ExPASy Swiss-Prot
Match: Y3221_ORYSJ (B3 domain-containing protein Os03g0622100 OS=Oryza sativa subsp. japonica GN=Os03g0622100 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 54/133 (40.60%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  256 MGEACNECRSWEEEIYWNHF--QCIHFIQYLHTGFEYQLAIPEKVARNLRTKLPVTVSLKAPSGFTWVVGITTRD-HTLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEKAVSYFVKKCG 645
            +G+ C+ C+ W+E  YW+H    C HF+ Y+   F   + +P + A N    +   V+LK+PSG TW +G+   D   L    GW EFV  + + END L F+Y+G S FDVL+FD  S CEKA  +FV+  G
Sbjct:    6 IGKNCSVCKEWQEHCYWSHMADDCKHFLTYMVGDFTESMIVPSRFANNFNGHISEVVNLKSPSGKTWSIGVAYSDTGELVLRSGWKEFVDANGVQENDCLLFRYSGVSSFDVLIFD-PSGCEKASPHFVENRG 137          
BLAST of FC931434 vs. ExPASy Swiss-Prot
Match: Y3222_ORYSJ (B3 domain-containing protein Os03g0622200 OS=Oryza sativa subsp. japonica GN=Os03g0622200 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.066e-19
Identity = 51/140 (36.43%), Postives = 76/140 (54.29%), Query Frame = 1
Query:  256 MGEACNECRSWEEEIYWNHF--QCIHFIQYLHTGFEYQLAIPEKVARNLRTKLPVTVSLKAPSGFTWVVGITTRD-HTLYFSHGWPEFVKDHFLGENDILFFKYNG-GSHFDVLMFDGQSQCEKAVSYFVKKCGHTEHSN 663
            +G+ C+ C+ W+E  YW+H      HF++++   F   + +P + A N    +   V+L++PSG TW +G+   D   L    GW EFV  + + E D L F+Y+G  S FDVL+FD  S CEKA  +FV   G     N
Sbjct:    6 IGKNCSVCKEWQEHCYWSHMADHSKHFLKHMVGDFTESMTVPARFANNFNGHISEEVNLRSPSGETWSIGVANSDAGELVLQPGWKEFVDGNGIEEGDCLLFRYSGVSSSFDVLIFD-PSGCEKASPHFVGSHGFGRAEN 144          
BLAST of FC931434 vs. ExPASy Swiss-Prot
Match: Y1223_ORYSJ (B3 domain-containing protein Os12g0592300 OS=Oryza sativa subsp. japonica GN=Os12g0592300 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.049e-19
Identity = 55/135 (40.74%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  256 MGE-ACNECRSWEEEIYWNHFQC--IHFIQYLHTGFEYQLAIPEKVARNLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFF----KYNGGSHFDVLMFDGQSQCEKAVSYFVKK 639
            MGE  C  CR W+E  Y  H     I F + +   F + ++IPEKVA     ++    +LKAPSG TW V +      L    GW +F K H L END+LFF    + NG   FDVL+FD  S CEK   +F+ K
Sbjct:    1 MGEKGCESCREWQEHCYREHMDVSRIRFFRLMTGDFAHGISIPEKVADRFSGQITKGFNLKAPSGETWRVSVEKVADELILMSGWEDFAKAHELQENDLLFFTCNGRCNGSFSFDVLIFDA-SGCEKVSCFFIGK 134          
BLAST of FC931434 vs. ExPASy Swiss-Prot
Match: Y1209_ORYSJ (B3 domain-containing protein LOC_Os12g40090 OS=Oryza sativa subsp. japonica GN=LOC_Os12g40090 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.003e-14
Identity = 45/110 (40.91%), Postives = 60/110 (54.55%), Query Frame = 1
Query:  322 IHFIQYLHTGFEYQLAIPEKVARNLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSH----FDVLMFDGQSQCEKAVSYFVKK 639
            I F + +   F + ++IPEKVA     ++    +LK+PSG TW VG+      L    GW +F K H L END+LFF  NG  +    FDVL+FD  S CEK   +F  K
Sbjct:    6 IRFFRLMTGDFAHGISIPEKVAEIFSGQITKGFNLKSPSGETWRVGVAKVADELILKSGWEDFAKAHELQENDLLFFTCNGHGNGSCSFDVLIFDA-SGCEKVSCFFTGK 114          
BLAST of FC931434 vs. ExPASy Swiss-Prot
Match: Y3216_ORYSJ (Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica GN=Os03g0621600 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 43/121 (35.54%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  268 CNECRSWEEEIYWN-HFQCIHFIQYLHTGFEYQLAIPEKVARNLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEKAVSY 627
            C  CR      +W+   Q  +F + +  GF  Q+ IP K A N R ++  T+ LKA +G T  V +    + L  + GW EF   H +   D L F+Y G S F+V +FD  S C KA S+
Sbjct:  132 CERCRG---RGFWDTDDQDTYFFKVMIGGFRRQMTIPYKFAENFRDQIQGTIKLKARNGNTCSVLVDKCSNKLVLTKGWAEFANSHDIKMGDFLVFRYTGNSQFEVKIFD-PSGCVKAASH 248          

HSP 2 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 37/100 (37.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  325 HFIQYLHTGFEYQLAIPEKVARNLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEKAVS 624
            +F + +   F  ++ IP+K AR+ +  +  T+ L+  SG+T+ V +T + + L    GW  FV  H L   D L FKYNG     VL+FD  S CEK+ S
Sbjct:  452 YFFKVMIGDFHKRMTIPDKFARHFKGVISKTIKLEPRSGYTFDVQVTKKLNILVLGSGWESFVNAHDLNMGDFLVFKYNGDFLLQVLIFD-PSGCEKSTS 550          
BLAST of FC931434 vs. ExPASy Swiss-Prot
Match: Y3440_ARATH (B3 domain-containing protein At4g34400 OS=Arabidopsis thaliana GN=At4g34400 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 1
Query:  328 FIQYLHTGFEYQLAIPEKVARNLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEK 615
            F+ +  + F   + IP     ++  + P TV L+ P G +W V    +D  + FS GWP+FV+D+ L + D L F YNG   F+V +F G   C++
Sbjct:   20 FVSHFSSEF---MVIPVSYYDHIPHRFPKTVILRGPGGCSWKVATEIKDDEVLFSQGWPKFVRDNTLNDGDFLTFAYNGAHIFEVSIFRGYDACKE 112          
BLAST of FC931434 vs. ExPASy Swiss-Prot
Match: Y8347_ORYSJ (B3 domain-containing protein Os08g0324300 OS=Oryza sativa subsp. japonica GN=Os08g0324300 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 41/139 (29.50%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  256 MGEACNECRSWEEEIYWNHFQCI-HFIQYLHTGFEYQLAIPEKVARNLRTKLPVTVSLKAPSGFTWVVGITTRDHTLYFSHGWPEFVKDHFLGENDILFFKYNGGSHFDVLMFDGQSQCEKAVSYFVKKCGHTEHSNRR 669
            MG +C  CR  +E+ Y N      HF+  +   F++++ IP++  + L+  +P  + L+  +  +  V +      + F+ GW +FVK   L   D + F++NG S FDV++ D Q   EKA S  V    +     RR
Sbjct:    1 MGTSCERCRRRDEQDYRNLDDSQKHFLLTMMGDFQHEMIIPKEFVQRLKGDIPGEIQLETRNRNSHTVRVDKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQFDVIIVD-QIGREKACSAVVDDSQNPNVQERR 138          
The following BLAST results are available for this feature:
BLAST of FC931434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
REM16_ARATH7.848e-3952.48B3 domain-containing protein REM16 OS=Arabidopsis ... [more]
Y3221_ORYSJ3.539e-2340.60B3 domain-containing protein Os03g0622100 OS=Oryza... [more]
Y3222_ORYSJ1.066e-1936.43B3 domain-containing protein Os03g0622200 OS=Oryza... [more]
Y1223_ORYSJ4.049e-1940.74B3 domain-containing protein Os12g0592300 OS=Oryza... [more]
Y1209_ORYSJ3.003e-1440.91B3 domain-containing protein LOC_Os12g40090 OS=Ory... [more]
Y3216_ORYSJ2.811e-1235.54Putative B3 domain-containing protein Os03g0621600... [more]
Y3440_ARATH1.395e-1134.38B3 domain-containing protein At4g34400 OS=Arabidop... [more]
Y8347_ORYSJ3.108e-1129.50B3 domain-containing protein Os08g0324300 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionC34105A11EF PostHarvP1 Citrus clementina cDNA clone C34105A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931434 ID=FC931434; Name=FC931434; organism=Citrus clementina; type=EST; length=731bp
GGTGTTGCAGCTCAGCTTCATCGGAGTGTATGTAGTCAAGAGTCGGATGC
AGACACAGTCACAAGGTTGAAGGGGTAACAGCTAATAGCTTCAGGCTTCA
ACTGCGTCTTTGTCATATCTTTCCTGCAAGAATATCAAATCAAATCAACT
GTTTCGCTTGTGCCTCATCTGTTGTTCTGGAGTAGCTGGTAAAAAAGTCT
CTGAAGTTGAGTTGAGATCAGATCAGATCGGATCCAAAGCTTCAGGTCGA
GGGACATGGGGGAAGCGTGCAACGAATGCAGGAGTTGGGAAGAGGAAATT
TATTGGAACCATTTCCAGTGTATCCATTTCATTCAGTATCTTCATACTGG
TTTTGAATACCAACTTGCTATTCCCGAAAAGGTTGCTAGAAATTTAAGAA
CAAAGCTTCCAGTAACCGTCTCTCTGAAGGCTCCCAGCGGTTTTACATGG
GTCGTAGGAATTACAACGAGAGATCATACCTTGTACTTCAGTCATGGTTG
GCCAGAATTTGTCAAAGATCATTTCCTGGGAGAAAATGATATCTTGTTCT
TTAAGTACAATGGAGGCTCACATTTTGATGTTTTAATGTTTGATGGGCAA
AGCCAATGTGAAAAAGCTGTTTCGTATTTTGTCAAAAAATGTGGGCATAC
GGAGCACAGCAATCGACGTGAAACCAGAAGAAAAATAGAGAAACTTCAGT
GGAAGGAATTCCAACTCATCACATTGTGATG
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