FC931673

Overview
NameFC931673
Unique NameFC931673
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 6.341e-57
Identity = 112/227 (49.34%), Postives = 150/227 (66.08%), Query Frame = 2
Query:    5 TGICAIEEAMVPLFETKEAKARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIELAIAKGSISKE 685
            T      E   PLF T+E   R  ++V AAT   GI L+L YR    P   +G   R AW+G+  A+ +F+++W+I QSVRW       F+DRL+ R+E+ LPGVDIFVCTADP SEPP+LVIST+LSVM+YNYP EK+SVYLSDD GS  TFYAL EAS F+K W+PFCK++++EPRSP A+F++   +   +    +    IK  Y++M+ RI+ A   G I +E
Sbjct:    4 TAAATAAERRRPLFTTEELGGRAVYRVQAATVAAGILLVLYYRATRVPAAGEG---RAAWLGMAAAELWFAVYWVIAQSVRWRPFRRRTFRDRLAERYEQNLPGVDIFVCTADPQSEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASIFAKKWLPFCKRYNIEPRSPAAYFSE--SKVHHNLCIPKEWALIKNLYEEMRERIDTATMSGKIPEE 225          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.082e-56
Identity = 112/224 (50.00%), Postives = 149/224 (66.52%), Query Frame = 2
Query:   38 PLFETKEA--KARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRH-EEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETGNHT 700
            PLF T++    A  +++V AAT F G+ LI +YR  + P     G RRWAW+G+  A+ +F  +W++T SVRW   +   FKDRL+  + E++LP VDIFVCTADP +EPP LVISTVLSVM+Y+Y PEKL++YLSDDAGS  TFY L EAS F+K+WIPFCKK+ VEPRSP A+FAK       D    +   T+K+ Y+DM  R+   +  G I +    H+
Sbjct:   18 PLFATEKPGRMAMAAYRVSAATVFAGVLLIWLYRATHLPPGGGDGVRRWAWLGMLAAELWFGFYWVLTLSVRWCPVYRRTFKDRLAQSYSEDELPSVDIFVCTADPTAEPPMLVISTVLSVMAYDYLPEKLNIYLSDDAGSVLTFYVLCEASEFAKHWIPFCKKYKVEPRSPAAYFAKV--ASPPDGCGPKEWFTMKELYKDMTDRVNSVVNSGRIPEVPRCHS 239          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.040e-55
Identity = 107/219 (48.86%), Postives = 152/219 (69.41%), Query Frame = 2
Query:   41 LFETKEAKARVSHKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKD----KDTTYTQACLTIKKQYQDMKTRIELAIAKGSISKE 685
            LF T++   R  +++ AAT   GI L+L YR    P   +G   R AW+G+  A+ +F+++W+ITQSVRW       FK+RL+ R++E LPGVD+FVCTADP +EPP+LVIST+LSVM+YNYP EK+SVYLSDD GS  TFYAL EAS F+K W+PFC+++++EPRSP A+F++  G  +    K+ ++      IK  Y++M+ RI+ A+  G I +E
Sbjct:   11 LFATEKVGGRAVYRLQAATVAAGILLVLYYRATRVPAAGEG---RAAWLGMAAAELWFAVYWVITQSVRWCPVRRRTFKNRLAERYKENLPGVDVFVCTADPHAEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASMFAKKWLPFCRRYNIEPRSPAAYFSESEGHHNLCSPKEWSF------IKNLYEEMRERIDSAVMSGKIPEE 220          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.255e-53
Identity = 110/228 (48.25%), Postives = 144/228 (63.16%), Query Frame = 2
Query:   38 PLFETKEAKARV-SHKVFAATCFVGICLILIYRLVNFPKEEQGGRR----RWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETGNHTGD 706
            PLFET+    RV +++ F+A+ FV ICLI  YR+      E G  R    R  W  +F+ + +F L+W++TQS RW+     PF DRLS R+   LP +D+FVCTADP+ EPP LV++TVLSV + +YPPEKL+VYLSDD GSE TFYAL EA+ F+K W+PFCKKF+VEP SP A+ + K    D       A   + K Y++M  RIE A   G I +E     GD
Sbjct:   18 PLFETRRRTGRVIAYRFFSASVFVCICLIWFYRI-----GEIGDNRTVLDRLIWFVMFIVEIWFGLYWVVTQSSRWNPVWRFPFSDRLSRRYGSDLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDYPPEKLAVYLSDDGGSELTFYALTEAAEFAKTWVPFCKKFNVEPTSPAAYLSSKANCLD------SAAEEVAKLYREMAARIETAARLGRIPEEARVKYGD 234          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.223e-35
Identity = 66/162 (40.74%), Postives = 103/162 (63.58%), Query Frame = 2
Query:  191 IFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIELAIAKGSI 676
            + ++D   +  W  T S+R+       + ++ +   E+  P +D+F+CTADP  EPP +V++T LSVM+Y YP +K+SVY+SDD GS  T +AL+EA+ FSK+W+PFCKK +V+ RSPE +F+ KL  +  +         IK  Y+DMK+R+E  +  G +
Sbjct:   79 LLLSDIVLAFMWATTTSLRYKPVRRTEYPEKYAAEPED-FPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKKNNVQDRSPEVYFSSKLRSRSDEAE------NIKMMYEDMKSRVEHVVESGKV 233          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.386e-34
Identity = 65/162 (40.12%), Postives = 103/162 (63.58%), Query Frame = 2
Query:  191 IFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIELAIAKGSI 676
            + ++D   +  W  T S+R +  H     ++ + + E+  P +D+F+CTADP  EPP +V++T LSVM+Y YP +K+SVY+SDD GS  TF+AL+EA+ FSK W+PFCKK +V+ RSPE +F+ +   +  +         +K  Y+DMK+R+E  +  G +
Sbjct:   60 LLLSDIVLAFMWATTTSLRLNPVHRTECPEKYAAKPED-FPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTFFALIEAAKFSKQWLPFCKKNNVQDRSPEVYFSSESHSRSDEAE------NLKMMYEDMKSRVEHVVESGKV 214          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.386e-34
Identity = 74/201 (36.82%), Postives = 121/201 (60.20%), Query Frame = 2
Query:  110 ICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            +C+ L YR+ N  +          W+   + + +F+L WI+ Q  +WS  +   + DRL+LR++ +     L  VDIFV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  +  TF AL E S F++ W+PFCKK+ +EPR+PE +FA+K+   KDK   ++ +    +K++Y++ K R+   +AK     E G
Sbjct:  279 LCIFLHYRITNPVRNAYP-----LWLLSVICEIWFALSWILDQFPKWSPINRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQASFVKDRRAMKREYEEFKVRVNALVAKAQKVPEEG 474          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.386e-34
Identity = 74/201 (36.82%), Postives = 121/201 (60.20%), Query Frame = 2
Query:  110 ICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGSISKETG 691
            +C+ L YR+ N  +          W+   + + +F+L WI+ Q  +WS  +   + DRL+LR++ +     L  VDIFV T DP+ EPP +  +TVLS+++ +YP +K+S Y+SDD  +  TF AL E S F++ W+PFCKK+ +EPR+PE +FA+K+   KDK   ++ +    +K++Y++ K R+   +AK     E G
Sbjct:  279 LCIFLHYRITNPVRNAYP-----LWLLSVICEIWFALSWILDQFPKWSPINRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVQASFVKDRRAMKREYEEFKVRVNALVAKAQKVPEEG 474          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.422e-34
Identity = 81/227 (35.68%), Postives = 133/227 (58.59%), Query Frame = 2
Query:   20 IEEAMVPLF-ETKEAKARVS-HKVFAATCFVGICLILIYRLVNFPKEEQGGRRRWAWIGIFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEK-----LPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGE-KDK-DTTYTQACLTIKKQYQDMKTRIELAIAKGS 673
            I+EA  PL  +   A ++++ +++      V + + L YRL+N   +  G      W+   + + +F++ WI+ Q  +W       + DRLSLR+E +     L  VD+FV T DP+ EPP +  +TVLS+++ +YP EK+S Y+SDD  S  TF +L E + F++ W+PFCKKF +EPR+PE +F  K+   +DK   T+ +    +K++Y++ K RI   +AK S
Sbjct:  216 IDEARQPLSRKVPIASSKINPYRMVIVARLVILAVFLRYRLLNPVHDALG-----LWLTSVICEIWFAVSWILDQFPKWFPIERETYLDRLSLRYEREGEPNMLAPVDVFVSTVDPLKEPPLVTSNTVLSILAMDYPVEKISCYVSDDGASMLTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFTLKVDYLQDKVHPTFVKERRAMKREYEEFKVRINAQVAKAS 437          
BLAST of FC931673 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.542e-34
Identity = 64/162 (39.51%), Postives = 101/162 (62.35%), Query Frame = 2
Query:  191 IFMADFFFSLFWIITQSVRWSVRHHLPFKDRLSLRHEEKLPGVDIFVCTADPISEPPTLVISTVLSVMSYNYPPEKLSVYLSDDAGSEFTFYALLEASHFSKYWIPFCKKFDVEPRSPEAWFAKKLGEKDKDTTYTQACLTIKKQYQDMKTRIELAIAKGSI 676
            + ++D   +  W  T S+R +  H   + ++ + + E+  P +D+F+CTADP  EPP +V++T LSVM+Y YP  K+SVY+SDD GS  T +AL+EA+ FSK+W+PFCK  +V+ RSPE +F+ K      +         +K  Y+DMK+R+E  +  G +
Sbjct:   57 LLLSDIVLAFMWATTTSLRLNPIHRTEYPEKYAAKPED-FPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSHKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKNNNVQDRSPEVYFSSKSHSSSDEAE------NLKMMYEDMKSRVEHVVESGKV 211          
The following BLAST results are available for this feature:
BLAST of FC931673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLE1_ORYSJ6.341e-5749.34Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE2_ORYSJ1.082e-5650.00Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLE6_ORYSJ2.040e-5548.86Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE1_ARATH7.255e-5348.25Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLG3_ARATH5.223e-3540.74Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLG1_ARATH3.386e-3440.12Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CESA2_ORYSJ3.386e-3436.82Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI3.386e-3436.82Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA7_ARATH4.422e-3435.68Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CSLG2_ARATH7.542e-3439.51Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34107G04EF PostHarvP1 Citrus clementina cDNA clone C34107G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931673 ID=FC931673; Name=FC931673; organism=Citrus clementina; type=EST; length=727bp
GAAAACTGGAATTTGTGCTATAGAAGAAGCTATGGTACCACTTTTCGAGA
CTAAGGAGGCGAAGGCTAGGGTTTCTCACAAGGTGTTCGCAGCAACATGT
TTTGTGGGAATTTGTTTGATATTGATTTACAGATTGGTTAACTTTCCAAA
AGAAGAACAAGGAGGAAGAAGGAGATGGGCTTGGATTGGCATTTTCATGG
CTGATTTTTTTTTCAGTTTGTTCTGGATCATCACCCAGTCTGTTCGTTGG
AGTGTAAGACACCATTTGCCTTTCAAAGACAGACTCTCCCTAAGACATGA
GGAGAAGTTACCGGGAGTTGACATTTTCGTGTGCACGGCGGACCCAATCT
CAGAGCCACCAACGTTGGTGATTAGTACTGTCTTATCCGTCATGTCATAT
AACTATCCACCGGAAAAATTGAGTGTTTATTTGTCTGATGATGCTGGTTC
AGAATTCACATTTTATGCTCTGTTAGAGGCCTCTCATTTCTCAAAGTATT
GGATACCGTTCTGCAAAAAATTCGATGTTGAACCAAGGTCACCAGAAGCC
TGGTTTGCTAAAAAACTTGGTGAGAAAGATAAAGATACCACTTATACTCA
AGCGTGTCTAACTATCAAGAAACAATACCAAGACATGAAAACCCGTATTG
AATTGGCCATTGCAAAGGGCAGCATTTCGAAAGAAACAGGAAATCACACA
GGGGATCTCTGAATGGAATGTAAAGTA
back to top