FC931773
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 251.521 bits (641), Expect = 3.616e-66 Identity = 125/215 (58.14%), Postives = 151/215 (70.23%), Query Frame = 1 Query: 112 EREENPAEPPMEKVSEKIXXXXXXXXXXXXXXNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756 E+ E MEK+SEKI E+P + S+VKA IYR+FGRE+PVH+V GGGKPADVFLWR+KK+S VLG ATAIWVLFEL EYHLL+L+CH W+NAHT I K P IPE+H+PEE FL VAS+ R ELN AF +LRSIA GRDLK FLM + LW++SVVG+W NFLTL YI V+LH +P LYEK+E ++D Sbjct: 6 EKSVPTEESLMEKISEKIHHHDSSSSSESEY--EKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVD 218
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 2.592e-64 Identity = 122/216 (56.48%), Postives = 151/216 (69.91%), Query Frame = 1 Query: 133 EPPMEKVSEKIXXXXXXXXXXXXXXNEEP--------AAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756 E M+K+SEKI +E+ + SS+K+ +YRLFGRE+PVH+V GGGKPAD+F+W+NKK+S GVLGGATA WV+FEL EYHLLTL+CH W+NA FI K+PP IPEVH+PEEP LQ+AS RIE+N F+ LR IASGRDLK FL+AIA LWVLS++G NFLTL YIALVLL +P Y+KYE ++D Sbjct: 24 ESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 1.680e-63 Identity = 120/215 (55.81%), Postives = 150/215 (69.77%), Query Frame = 1 Query: 112 EREENPAEPPMEKVSEKIXXXXXXXXXXXXXXNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756 E+ + E MEK+++KI +E+P + S++KA IYRLFGRE+PVH+V GGG PADVFLWR+KK+SA VLG ATAIWVLFEL EYH L+LVCH +NAH F+ K PP IPE+H+ EE FL + SA R ELN AF +LRSIA GRDLK FLM + LW++SVVG+W NFLTL YI V+LH +P LYEK+E ++D Sbjct: 6 EKSMHKEESLMEKIADKIHDHDSSSSSDSE--HEKPESPSALKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVD 218
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.857e-62 Identity = 125/217 (57.60%), Postives = 150/217 (69.12%), Query Frame = 1 Query: 106 MAEREENPAEPPMEKVSEKIXXXXXXXXXXXXXXNEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756 MAE E E MEK+SEKI +++ +A S+K IYRLFGRE+P+H++FGGGKPAD+FLWRNKK+S GVLG AT W+LFEL EY+LLTL H W++A TFI K+P IPEVH+PE+ LQ+AS RIE+N F VLR IASGRDLK FL+ IA LWVLS VGS CNFLTL YIA VLL +P LYEKYE ++D Sbjct: 1 MAE-EHKHEESIMEKISEKIHGHDDSSSSSSDSDDDKNSA--SLKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVD 214
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 4.138e-62 Identity = 119/212 (56.13%), Postives = 145/212 (68.40%), Query Frame = 1 Query: 133 EPPMEKVSEKIXXXXXXXXXXXXXXNEEPAAQSS----VKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756 E MEK+SEKI E + SS +K+ +YRLFGRERPVH+V GGGKPAD+F+W++KK+S GV GGAT WVLFEL EYHLLTL+CH W+NA FI K+PP IPEVH+PEEP LQ+AS RIE+N + LR IASGRD+K FL AIA LWVLS++G +FLTL YIALVLL +P Y+KYE ++D Sbjct: 24 ESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVD 235
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1) HSP 1 Score: 237.654 bits (605), Expect = 5.404e-62 Identity = 116/210 (55.24%), Postives = 146/210 (69.52%), Query Frame = 1 Query: 133 EPPMEKVSEKIXXXXXXXXXXXXXXNEEP--AAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756 E +EK+ EKI +++ ++ SS K+ IYRLFGRE+PVH+V GGGKPAD+FLWRNKK+S GVLG TA WVLFELFEYHLL +CH W+NA TFI K+ P IPEVH+PE+P LQ+ S RIE+N +LR+IASG+D+K F++ IA LWVLS++GS NFLTLFY A VLL +P LYEKYE ++D Sbjct: 9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVD 218
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 3.401e-48 Identity = 91/183 (49.73%), Postives = 125/183 (68.31%), Query Frame = 1 Query: 208 NEEPAAQSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756 +E+P + + A IYR+FGRERP+H V GGGKPADV LWR+KK++ G+L T IW+LF LLT +C W+NA + K+P + ++++PE+P LQ ASA ELN AFA LRSIA RD+K+F+MA+ LW++SV+G+W +FL+L YI VL+H +P LYEKYE +ID Sbjct: 38 SEKPDSPVPINAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEID 217
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 7.338e-43 Identity = 84/177 (47.46%), Postives = 113/177 (63.84%), Query Frame = 1 Query: 226 QSSVKADIYRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756 + SV + RLF R++P+H V GGGK ADV LWRNKKISA VL GATAIWVLFE +H L+LVC+ W+NA F+ ++ +P + LP++ F +V A E+N L+ +A +LK FLMA+ LWV ++VGS CNFLT+ YI V H +P LYE+YE ++D Sbjct: 35 EDSVSSRFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVD 211
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.366e-33 Identity = 64/168 (38.10%), Postives = 98/168 (58.33%), Query Frame = 1 Query: 253 RLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756 +LF R+R +H +FGGGK AD+ LWR KI+A ++ G + +W L E+ EY+ +TL+CH W+ A F+ P IPEV L E F Q+A +F + N L +A GRD F + +L+++S++G++ NF+ L +I V + LP +YE YE +D Sbjct: 22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVD 189
BLAST of FC931773 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.145e-26 Identity = 59/169 (34.91%), Postives = 88/169 (52.07%), Query Frame = 1 Query: 250 YRLFGRERPVHQVFGGGKPADVFLWRNKKISAGVLGGATAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHILPGLYEKYEGQID 756 YRL GR+ VHQ GGGK AD+ LWR + +S GV+ +T W++FE L++ A F + +PE+ L EE A++FRI+LNH + + G D + F + LW+LS +GS+ + TL YI +L +P LY KY+ ++D Sbjct: 23 YRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVD 191 The following BLAST results are available for this feature:
BLAST of FC931773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931773 ID=FC931773; Name=FC931773; organism=Citrus clementina; type=EST; length=758bpback to top |