FC931839

Overview
NameFC931839
Unique NameFC931839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931839 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 7.830e-70
Identity = 130/208 (62.50%), Postives = 159/208 (76.44%), Query Frame = 3
Query:   69 MTSASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQSLLPTRILVFIGGA 692
            M S++PPVLPISN                    TPAFR  IN I+++++ G ++RRPWAELADRSA SKPES S+A +RIRKNYSYF+VNYLTV   ++ FSL+T+PFSL+ L+ LLASW+FLYLFRP+DQP+V+FGRTFS+RETLG LI+ SIFV FLT VGS+L+SA+M+G  LICAHGAFR PEDLFLDEQ    T  L F+GGA
Sbjct:    1 MASSAPPVLPISNPQTVPSAAPSSVESQPPIA-TPAFRNFINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQEPAATGFLSFLGGA 207          
BLAST of FC931839 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 7.848e-62
Identity = 117/205 (57.07%), Postives = 152/205 (74.15%), Query Frame = 3
Query:   78 ASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQSLLPTRILVFIGGA 692
            A+PP LPIS+                    TPAFR  ++ +S S+R   +QRRPW EL DRSA S+PES ++A  RIR+N  YF+VNY+T+V++V+A SL+++PFSLL+L+ L  +WIFLYLFRPSDQPLVV GRTFS+RETLGVL++L+I V FLTSVGS+L SA+M+G G++C HGAFRVPEDLFLD+Q    T +L F+ GA
Sbjct:    3 ANPPTLPISDHSGGGSQSQQPVS-------TPAFRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPANTGLLSFLSGA 200          
BLAST of FC931839 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.218e-59
Identity = 110/205 (53.66%), Postives = 148/205 (72.20%), Query Frame = 3
Query:   78 ASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQSLLPTRILVFIGGA 692
            A+PP LP++N                    TPAFR   + +S S+R G +QRRPW EL DRS+ ++PES ++A  RIRKN +YF+VNY+ +V++V+AFSL ++P SLL+L+GLL  W+FLYLFRPSDQPLVVFGRTFS+RETL  L++ +I V F+TSVGS+L SA+M+G  ++C HGAF VP+DLFLDEQ      +L F+GG+
Sbjct:    2 ATPPTLPVTNQQAVQSQPPIN---------TPAFRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPANAGLLSFLGGS 197          
BLAST of FC931839 vs. ExPASy Swiss-Prot
Match: PR1B5_ARATH (PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.456e-57
Identity = 111/206 (53.88%), Postives = 145/206 (70.39%), Query Frame = 3
Query:   69 MTSASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQSLLPTRILVFIG 686
            M S +PPVLPIS                      P  RA +N +++++  G ++ RPW+EL DRSAF+KP+S SEA  R RKN SYFRVNY+ +VA+++ FSL+ +PFSL++L+ L ASW+FLYLFRPSD+PL++FGR+FSE ETLG LI+ +I V F TSVGS+LISA+M+G   IC HGAFR P+DLFLDEQ    +  L FIG
Sbjct:    1 MVSTNPPVLPISTTATDTTNQPPIVTAVVESQP-PVVRAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQDHAASGFLSFIG 205          
BLAST of FC931839 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 7.115e-55
Identity = 105/206 (50.97%), Postives = 148/206 (71.84%), Query Frame = 3
Query:   75 SASPPVLPISNXXXXXXXXXXXXXXXXXXXXTPAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQSLLPTRILVFIGGA 692
            S+SP +LP++N                    + AFR  ++ +S SLR   +QRRPW EL DRS+F++P+S +++  RIRKN +YF+VNY  +V++V+AFSL+++PFSLL+L+ LL SW+FLYLFR SDQPLV+FGR+FS+RETL  L++ +I V F+TSVGS+L SA+ +G  ++C HGAFRVP+DLFLDEQ      +L FIG +
Sbjct:    2 SSSPAILPVTNQQAATQSQPPIN--------SHAFRTFLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPANAGLLSFIGNS 199          
BLAST of FC931839 vs. ExPASy Swiss-Prot
Match: PR1B6_ARATH (PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.772e-51
Identity = 93/169 (55.03%), Postives = 129/169 (76.33%), Query Frame = 3
Query:  174 AFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQSLLPTRILVF 680
            + R L++ +  ++R+  A  RPWAEL DRSAFS+P S SEAT R+RKN+SYFR NY+T+VA+++A SL+T+PF+L +L  L ASW+FLY FRP+DQPLV+ GRTFS+ ETLG+L + ++ V F+TSVGS+L+S + VG   +  HGAFR PEDLFL+EQ  + + +  F
Sbjct:   25 SLRVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAIGSGLFAF 193          
BLAST of FC931839 vs. ExPASy Swiss-Prot
Match: PR1F1_ARATH (PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.184e-25
Identity = 64/164 (39.02%), Postives = 91/164 (55.49%), Query Frame = 3
Query:  171 PAFRALINHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLF-LDEQSLL 659
            P    +   I+   R G A RRPW ++ D  +F+ P   +    RIR N  YF+ NY  VV   +  SLI NPFSLL+L+ LL +W+FLY  R  D+PL VF R    R  L ++ V+++ + FLT     +  A++ GA  + +H A R  EDLF  DE++ L
Sbjct:   16 PKLEYITRGINQHKRSGLATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLR--DEPLTVFDREIDHRIVLIIMSVITLSILFLTDAKLNIAVAIVAGALAVLSHAAVRKTEDLFQTDEETSL 177          
BLAST of FC931839 vs. ExPASy Swiss-Prot
Match: PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.483e-24
Identity = 59/148 (39.86%), Postives = 87/148 (58.78%), Query Frame = 3
Query:  210 LRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQS 653
            ++ G A RR W  + D  +   P   S+A  RI+ N +YFR+NY  VV +VI FSLI +P SL++   L+  WIFLY  R  D+P+ +F     +R  L VL VL++ +  LT+    ++ A++ GA L+  H   R  EDLFLDE++
Sbjct:   29 IKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLR--DEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEEA 174          
BLAST of FC931839 vs. ExPASy Swiss-Prot
Match: PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23
Identity = 59/159 (37.11%), Postives = 89/159 (55.97%), Query Frame = 3
Query:  189 INHISDSLRYGFAQRRPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQSLLPT 665
            I+     ++ G A RRPW  + D  + + P  F +A  RI+ N  YFR NY   V  ++  SL+ +P SL++L  L+  WIFLY  R  D+PLVVFG    +R  L  L VL++ +  LT   S ++ +++  A L+  H A R  ++LFLDE++   T
Sbjct:   22 ISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLR--DEPLVVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEEAAAVT 178          
BLAST of FC931839 vs. ExPASy Swiss-Prot
Match: PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 49/140 (35.00%), Postives = 82/140 (58.57%), Query Frame = 3
Query:  234 RPWAELADRSAFSKPESFSEATLRIRKNYSYFRVNYLTVVAVVIAFSLITNPFSLLMLVGLLASWIFLYLFRPSDQPLVVFGRTFSERETLGVLIVLSIFVFFLTSVGSILISAVMVGAGLICAHGAFRVPEDLFLDEQS 653
            RPW E+ D SA S P  + EA   ++ N SYFR NY   V  ++   LI +P S++  + +   WI LY  R ++  +V+ G+   ++  L +L ++++     T VG  ++ ++++G  ++ AHGAFR  +DLFLDE+S
Sbjct:   48 RPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEES 187          
The following BLAST results are available for this feature:
BLAST of FC931839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PR1B4_ARATH7.830e-7062.50PRA1 family protein B4 OS=Arabidopsis thaliana GN=... [more]
PR1B3_ARATH7.848e-6257.07PRA1 family protein B3 OS=Arabidopsis thaliana GN=... [more]
PR1B1_ARATH6.218e-5953.66PRA1 family protein B1 OS=Arabidopsis thaliana GN=... [more]
PR1B5_ARATH4.456e-5753.88PRA1 family protein B5 OS=Arabidopsis thaliana GN=... [more]
PR1B2_ARATH7.115e-5550.97PRA1 family protein B2 OS=Arabidopsis thaliana GN=... [more]
PR1B6_ARATH4.772e-5155.03PRA1 family protein B6 OS=Arabidopsis thaliana GN=... [more]
PR1F1_ARATH1.184e-2539.02PRA1 family protein F1 OS=Arabidopsis thaliana GN=... [more]
PR1F3_ARATH8.483e-2439.86PRA1 family protein F3 OS=Arabidopsis thaliana GN=... [more]
PR1F2_ARATH2.468e-2337.11PRA1 family protein F2 OS=Arabidopsis thaliana GN=... [more]
PRA1E_ARATH9.379e-2335.00PRA1 family protein E OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC34201G04EF PostHarveN Citrus clementina cDNA clone C34201G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931839 ID=FC931839; Name=FC931839; organism=Citrus clementina; type=EST; length=693bp
CAATATCTTTCAATTCATTAGCCACCAAAGAACGATAAGAAAAAGGTAAC
AATAATAAAATTCCCAAAATGACCTCCGCATCGCCACCAGTCCTCCCAAT
CTCCAACTCCCAACCGACCACCACGGCGTCCTCCGCTTCCTCGGTCCAAT
CCCAACCACCAGTGGCGACCCCGGCTTTCCGCGCCCTAATCAACCACATC
TCCGACTCACTCCGTTACGGCTTCGCCCAGCGCCGCCCGTGGGCCGAACT
CGCCGACCGATCCGCCTTCTCCAAACCGGAGTCGTTCTCCGAAGCCACCC
TCCGCATCCGCAAGAACTACTCCTATTTCCGAGTCAATTACCTCACGGTC
GTCGCTGTCGTCATTGCTTTCTCTCTCATCACCAATCCTTTCTCTCTCCT
CATGCTCGTCGGACTCCTCGCCTCCTGGATCTTCCTCTACCTCTTCCGCC
CCTCCGATCAGCCGCTCGTTGTATTCGGCCGCACGTTCAGCGAGCGCGAG
ACGCTTGGTGTCTTGATCGTTTTGAGCATCTTCGTCTTTTTCCTCACCAG
TGTCGGATCGATCTTGATCTCGGCTGTGATGGTGGGGGCTGGTCTGATTT
GTGCTCACGGTGCGTTTAGGGTTCCTGAAGATCTGTTCTTGGACGAACAG
AGCCTTCTGCCAACACGGATTCTTGTCTTCATCGGTGGCGCCG
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