FC931910

Overview
NameFC931910
Unique NameFC931910
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.940e-22
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  369 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGL-ANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKR--THGRYLL 644
            C+VCE+A A + C ADEAALC +CDEK+H  NKLA +H RV L A+ S +P+CDIC+ A  FF+C  D + LC +CD+ +H        H R+LL
Sbjct:    5 CNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLL 99          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  369 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS-DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYL 641
            CDVCE A A + C ADEAALC  CD ++H  NKLAS+H R+ L + S   PRCDIC+   AF +C  D + LC  CD ++HV   R+  H R+L
Sbjct:    5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFL 98          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  369 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS----DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLL 644
            CDVC+   A +FC ADEA+LC  CD +VH  NKLAS+H+R  L  PS      P CDIC++  A  +C+ D + LC  CD ++H   + T  H R+LL
Sbjct:    5 CDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLL 102          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 49/100 (49.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  369 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPS-DVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRT--HGRYLLLRQRV 659
            CDVCE A A L C ADEAALC  CD +VH  NKLAS+H R+ L + S   P CDIC    AF +C  D + LC  CD   H    R+  H R+L    RV
Sbjct:    5 CDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRV 104          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  366 LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVH 608
            LCD C+S AA LFC AD A LC  CD K+H  NKLASRH RV L        C++CE APA   C+ D ++LC+ CD  +H
Sbjct:    7 LCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL--------CEVCEQAPAHVTCKADAAALCVTCDRDIH 79          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.955e-18
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  366 LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVH 608
            LCD C+SA A L+C  D A LC SCD KVH  NKLASRH RV +        C++CE APA   C+ D ++LC+ CD  +H
Sbjct:    5 LCDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM--------CEVCEQAPAHVTCKADAAALCVTCDRDIH 77          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 44/95 (46.32%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  369 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGRYLLL 647
            CD C SAA  ++C AD A LC SCD +VH  N+LASRH RV +        C  CE APA F+C+ D +SLC  CD  +H      R H R  +L
Sbjct:   12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV--------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPIL 98          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 44/95 (46.32%), Postives = 53/95 (55.79%), Query Frame = 3
Query:  369 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGRYLLL 647
            CD C S A  ++C AD A LC SCD +VH  N++ASRH RV +        C+ CE APA F CE D +SLC  CD  VH      R H R  +L
Sbjct:   20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV--------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPIL 106          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 42/95 (44.21%), Postives = 54/95 (56.84%), Query Frame = 3
Query:  369 CDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGG--KRTHGRYLLL 647
            CD C SAA  ++C AD A LC +CD +VH  N++ASRH RV +        C  CE+APA F C+ D +SLC  CD  +H      R H R  +L
Sbjct:   16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV--------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPIL 102          
BLAST of FC931910 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 3
Query:  366 LCDVCESAAAILFCAADEAALCRSCDEKVHMCNKLASRHVRVGLANPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMTVHVGGKRTHGR 635
            LCD C+S+ A+++C AD A LC +CD++VH+ N+L ++H R  L        CD C  +P+  +CE + S LC  CD   H      H R
Sbjct:   12 LCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLL--------CDSCNESPSSLFCETERSVLCQNCDWQHHTASSSLHSR 93          
The following BLAST results are available for this feature:
BLAST of FC931910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
STHY_ARATH7.940e-2250.53Probable salt tolerance-like protein At1g78600 OS=... [more]
STO_ARATH5.690e-2050.00Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
STHX_ARATH7.431e-2045.92Probable salt tolerance-like protein At1g75540 OS=... [more]
STH_ARATH4.078e-1849.00Salt tolerance-like protein OS=Arabidopsis thalian... [more]
COL3_ARATH5.326e-1851.85Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL4_ARATH6.955e-1850.62Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL1_ARATH2.024e-1746.32Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
CONS_ARATH1.713e-1646.32Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL2_ARATH1.713e-1644.21Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL13_ARATH9.400e-1538.89Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC34202E04EF PostHarveN Citrus clementina cDNA clone C34202E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931910 ID=FC931910; Name=FC931910; organism=Citrus clementina; type=EST; length=693bp
GATTTGTCTCCCTTCATTCACTGCTCTCTCTCTCTCTCTCTCTCTTTCTC
CATCCAACACCAACAGCACCCCCCATTCAACGCGCAACAAACATATATTT
AAGCTCCAGTTTTCTTTCTTTTTTTTTCTTTTTTTTTATAATACGTAAAA
TTTGCTTTCAGGTTAGTTAACTCAATCGAGCTCTCTAATCTAATCTGTTT
CTGAACTTGTTGGATTCATCATCATCATCTTTGCACTAGTTTGGTTTCGC
CAGTGAAAAATACGATGTCGTTTTCGAGACAGAGATAGCTCGAATGAAAA
AGTAGAGAGATTAGAATAGATAGATTGATCGAACCAAAAGAAAAAGAAAC
AGAAAAATGCGAACGCTTTGCGACGTGTGTGAAAGCGCAGCTGCGATTCT
TTTCTGCGCTGCTGATGAGGCCGCTCTTTGCCGCTCTTGCGACGAAAAGG
TCCATATGTGCAATAAGCTTGCTAGTCGTCATGTGAGGGTAGGGCTTGCT
AACCCCAGTGATGTCCCACGATGTGACATCTGTGAAAATGCTCCTGCTTT
CTTTTACTGTGAGATAGATGGTAGTTCCCTGTGCTTGCAATGCGATATGA
CTGTTCATGTCGGTGGTAAAAGAACCCATGGGAGATATCTCCTTTTGAGG
CAGAGAGTTGAGTTTCCAGGGGGACAGGCTGGTCGTTTGGAGG
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