FC932177

Overview
NameFC932177
Unique NameFC932177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932177_ssr85 microsatellite FC932177_ssr85:85..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7386 contig Ccv1_Contig7386:203..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHP_ARATH (Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.584e-42
Identity = 100/157 (63.69%), Postives = 117/157 (74.52%), Query Frame = 2
Query:  236 KAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESDTSFLNKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            KA  +P S+   V+FNS   + SF+GLK+ TS+I  SD+S L K     LR +   KAQ+S+++P    +  AS+KVAVLGAAGGIGQPL+LLIKMSPLVS LHLYD+ NVKGVAADLSHCNTPSQV DFTGP ELA  LK VNVVVIPAGV  K G
Sbjct:   19 KASSIPHSRLQSVKFNS---VPSFTGLKS-TSLISGSDSSSLAK----TLRGSVT-KAQTSDKKPYG-FKINASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPG 165          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_FRAAN (Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.201e-24
Identity = 64/116 (55.17%), Postives = 78/116 (67.24%), Query Frame = 2
Query:  365 KESCSALRST--FARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            + S S +RS    AR+  SSE  PQ         KVAVLGAAGGIGQPLALL+K++PLVS L LYD+    GVAAD+SH NT S+V  + G E+L  AL+G +VV+IPAGV  K G
Sbjct:    2 RPSMSLIRSVSRVARRGYSSESVPQR--------KVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIAGTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPG 109          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_EUCGU (Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.075e-23
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 2
Query:  362 NKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            ++ S +A R    R+A  SE  P+         KVAVLGAAGGIGQPLALL+K++PLVS L LYD+    GVAAD+ H NT S+V  + G E+L  AL+G +VV+IPAGV  K G
Sbjct:   11 SRSSSAAPRPHLLRRAYGSESVPER--------KVAVLGAAGGIGQPLALLMKLNPLVSQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPG 117          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_BRANA (Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.075e-23
Identity = 62/118 (52.54%), Postives = 81/118 (68.64%), Query Frame = 2
Query:  353 SFLNKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            S L + S SA +S   R++ SS   P+         KVA+LGAAGGIGQPLALL+K++PLVS+L LYD+ N  GVAAD+ H NT SQV+ + G + LA AL+G ++V+IPAGV  K G
Sbjct:    4 SALVRSSASAKQSLL-RRSFSSGSVPER--------KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPG 112          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHG_ORYSJ (Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.710e-23
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 2
Query:  377 SALRSTFARKAQSSEQRPQNALQPQAS--FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            S LR   ++  +S   R  N     A+  FKVA+LGA+GGIGQPLALL+KM+PLVS LHLYDV+N  GV AD+SH NT + V  F G  +L +AL G+++V+IPAGV  K G
Sbjct:   16 SHLRPPASQMEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPG 127          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM1_ARATH (Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.622e-23
Identity = 60/118 (50.85%), Postives = 81/118 (68.64%), Query Frame = 2
Query:  353 SFLNKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            S L + S SA ++   R++ SS   P+         KVA+LGAAGGIGQPLALL+K++PLVS+L LYD+ N  GVAAD+ H NT S+V+ + G + LA AL+G ++V+IPAGV  K G
Sbjct:    4 SMLVRSSASAKQAVI-RRSFSSGSVPER--------KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPG 112          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G ++L  AL G+++VVIPAGV  K G
Sbjct:   45 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPG 127          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_HUMAN (Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  353 SFLNKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            S L + + +ALR +F+  AQ++              KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGV  K G
Sbjct:    3 SALARPASAALRRSFSTSAQNNA-------------KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPG 107          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.030e-22
Identity = 50/83 (60.24%), Postives = 67/83 (80.72%), Query Frame = 2
Query:  458 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N  GV AD+SH +T + V  F G ++L +AL G++++++PAGV  K G
Sbjct:   45 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPG 127          
BLAST of FC932177 vs. ExPASy Swiss-Prot
Match: MDHM_MACFA (Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 61/118 (51.69%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  353 SFLNKESCSALRSTFARKAQSSEQRPQNALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVQEKLG 706
            S L + + +ALR +F+  AQ++              KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ +  GVAADLSH  T + V  + GPE+L   LKG +VVVIPAGV  K G
Sbjct:    3 SALARPASAALRRSFSTSAQNNA-------------KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAVVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPG 107          
The following BLAST results are available for this feature:
BLAST of FC932177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
MDHP_ARATH7.584e-4263.69Malate dehydrogenase, chloroplastic OS=Arabidopsis... [more]
MDHM_FRAAN3.201e-2455.17Malate dehydrogenase, mitochondrial OS=Fragaria an... [more]
MDHM_EUCGU2.075e-2352.17Malate dehydrogenase, mitochondrial OS=Eucalyptus ... [more]
MDHM_BRANA2.075e-2352.54Malate dehydrogenase, mitochondrial OS=Brassica na... [more]
MDHG_ORYSJ2.710e-2353.57Malate dehydrogenase, glyoxysomal OS=Oryza sativa ... [more]
MDHM1_ARATH4.622e-2350.85Malate dehydrogenase 1, mitochondrial OS=Arabidops... [more]
MDHG_CUCSA7.884e-2363.86Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHM_HUMAN1.030e-2251.69Malate dehydrogenase, mitochondrial OS=Homo sapien... [more]
MDHG_CITLA1.030e-2260.24Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDHM_MACFA1.345e-2251.69Malate dehydrogenase, mitochondrial OS=Macaca fasc... [more]

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Properties
Property NameValue
Genbank descriptionC34205D12EF PostHarveN Citrus clementina cDNA clone C34205D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932177 ID=FC932177; Name=FC932177; organism=Citrus clementina; type=EST; length=730bp
GGACGCTTTCGAAAAAGCGTAGATTCGTTCAAGGCCCATTCGGCGGAGGA
AGAGACACCCAGTTTACAATAACCCTTTCGAAAATCTTCTTCTTCTTCTT
CTCTCTTTCCCCCCAACGCCAGCAGCAACACCGCCATCTCTTCCAGCTTC
ACGCAAATCTCAAGTGTCAGAGTGTGAAATGGCCGCTACATCAGCTACAA
CCTTTTCAATTACATCAACTATTGCCTTTGGCCCCAAGGCAGGCCAACTT
CCACAGTCAAAACCCTCTGGTGTGAGGTTCAACTCCAAGAAATCACTTGT
GAGTTTCAGTGGCCTCAAGGCAGTGACATCAGTTATCTGTGAATCAGATA
CCTCTTTCTTGAACAAGGAGAGTTGTTCAGCTCTTCGAAGCACTTTTGCA
AGAAAAGCCCAAAGTTCAGAGCAGAGGCCTCAGAATGCCCTACAGCCTCA
GGCTTCTTTTAAAGTAGCAGTTCTTGGAGCTGCTGGTGGAATAGGTCAAC
CCTTAGCACTTCTAATCAAGATGTCCCCACTAGTATCAGCCCTTCACCTC
TATGATGTAATGAATGTCAAGGGAGTTGCTGCTGACCTCAGTCACTGCAA
CACTCCCTCTCAAGTTCTGGATTTCACAGGACCTGAAGAATTAGCCAGTG
CTTTGAAAGGGGTGAATGTCGTCGTCATACCTGCTGGAGTCCAAGAAAAG
CTGGGATGACCGTGATGACCTCTTCACATC
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