FC932496
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3) HSP 1 Score: 406.371 bits (1043), Expect = 8.148e-113 Identity = 197/223 (88.34%), Postives = 211/223 (94.62%), Query Frame = 3 Query: 60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728 MFRNQYDTDVTTWSP GRLFQVEYAMEAVKQGSAAIGLRS++HVVL CVNKA SELSSHQ+KIFKVDDHIGVAIAGLTADGRVLSRYMRSE IN+S+TYESPLPVGRLVV LADKAQVCTQRSWKRPYGVGLLV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE+F +S+REDLIKDA++A+RETLQGETLKSS+CTVA++G E FH L Sbjct: 1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHFL 223
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2) HSP 1 Score: 405.986 bits (1042), Expect = 1.064e-112 Identity = 198/223 (88.79%), Postives = 211/223 (94.62%), Query Frame = 3 Query: 60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEAFHIL 728 MFRNQYDTDVTTWSP GRLFQVEYAMEAVKQGSAAIGLRS++HVVL CVNKA SELSSHQ+KIFKVDDHIGVAIAGLTADGRVLSRYMRSE IN+S+TYESPLPVGRLVV LADKAQVCTQRSWKRPYGVGLLV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER+FE+F ES++EDLIKDA+MAIRETLQGETLKSS+CTV+V+G E FH L Sbjct: 1 MFRNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHFL 223
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1) HSP 1 Score: 362.459 bits (929), Expect = 1.349e-99 Identity = 174/215 (80.93%), Postives = 195/215 (90.70%), Query Frame = 3 Query: 60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVG 704 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSA +GLRS+TH VL NKA SELSSHQ+K+F+V DH GVA+AGLTADGRVLSR++RSECIN+++ Y++PLPV RL ++LADKAQVCTQRSWKRPYGVGLLVAGLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKT+LERRFE +++ T E LIKDAL AI+ETLQGE L SS CTVA+VG Sbjct: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVG 215
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1) HSP 1 Score: 274.633 bits (701), Expect = 3.700e-73 Identity = 132/225 (58.67%), Postives = 175/225 (77.78%), Query Frame = 3 Query: 60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG--ETLKSSICTVAVVGAGEAFHIL 728 M+RNQYD+D+TT+SP+GR+ Q+EYAMEAVKQG AA+ L+SK VL + +++SEL S+QKKIF VDDH+G+AI+GLTAD R+L YMR+EC NY+Y YES + V RLV ++ADK QV TQR +RPYGVGLLVAG D+ GAH+Y CPSGN+++Y++ +IGSRSQ+AKTYLE+ FE+F E T E LI L A+RET+ +TL S ++ +VG G+ F I+ Sbjct: 1 MYRNQYDSDITTFSPSGRIHQIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSELGSYQKKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQPFKII 225
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 2.323e-67 Identity = 122/223 (54.71%), Postives = 161/223 (72.20%), Query Frame = 3 Query: 60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEAFHI 725 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQKKI VD+HIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E ++L+K L A+RETL E L + ++ +VG F I Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTI 223
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 3.962e-67 Identity = 122/223 (54.71%), Postives = 160/223 (71.75%), Query Frame = 3 Query: 60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEAFHI 725 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQKKI VD+HIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTI 223
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 3.962e-67 Identity = 122/223 (54.71%), Postives = 160/223 (71.75%), Query Frame = 3 Query: 60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEAFHI 725 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQKKI VD+HIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTI 223
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 3.962e-67 Identity = 122/223 (54.71%), Postives = 160/223 (71.75%), Query Frame = 3 Query: 60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEAFHI 725 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQKKI VD+HIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTI 223
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2) HSP 1 Score: 253.832 bits (647), Expect = 6.759e-67 Identity = 121/223 (54.26%), Postives = 161/223 (72.20%), Query Frame = 3 Query: 60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEAFHI 725 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQKKI VD+HIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F + ++L+K L A+RETL E L + ++ +VG F I Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTI 223
BLAST of FC932496 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.153e-66 Identity = 121/223 (54.26%), Postives = 160/223 (71.75%), Query Frame = 3 Query: 60 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEAFHI 725 MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++H+KKI VD+HIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ TQR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F E +L+K L A+RETL E L + ++ +VG F I Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHRKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTI 223 The following BLAST results are available for this feature:
BLAST of FC932496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932496 ID=FC932496; Name=FC932496; organism=Citrus clementina; type=EST; length=730bpback to top |