BQ623467

Overview
NameBQ623467
Unique NameBQ623467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig24 contig Csv1_Contig24:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 322.783 bits (826), Expect = 1.069e-87
Identity = 159/228 (69.74%), Postives = 185/228 (81.14%), Query Frame = 1
Query:    1 DIIL*VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSNHCQFSV 684
            ++ + VFDA VGDIAIVT RT+ VDFTQPYIESGLVVVAPV KLN + WAFLRPFTP MWA             WILEHR+NDEFRGPPRKQIVT+LWFSFSTMFF+HRENTVSTLGR             TSSYTASLTSILTVQQL+SPI+G+DTL++S+ RVG+QVGS+AENY+I+EL+I +SRLV LGSP+EYA AL+N TVAA+VDERPY+DLFLS  C F++
Sbjct:  532 NVTIGVFDAVVGDIAIVTKRTRIVDFTQPYIESGLVVVAPVTKLNDTPWAFLRPFTPPMWAVTAAFFLIVGSVIWILEHRINDEFRGPPRKQIVTILWFSFSTMFFSHRENTVSTLGRAVLLIWLFVVLIITSSYTASLTSILTVQQLNSPIRGVDTLISSSGRVGFQVGSYAENYMIDELNIARSRLVPLGSPKEYAAALQNGTVAAIVDERPYVDLFLSEFCGFAI 759          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 3.218e-84
Identity = 153/222 (68.92%), Postives = 178/222 (80.18%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSNHCQFSV 684
            FDA VGDIAIVT RT+ VDFTQPYIESGLVVVAPV +LN + WAFLRPFT  MWA             WILEHR+NDEFRGPPR+QI+T+LWF+FSTMFF+HRE TVSTLGR             TSSYTASLTSILTVQQL+SPIKG+DTL++S  R+G+QVGSFAENY+ +EL+I  SRLV L SPEEYA AL+N TVAA+VDERPYIDLFLS++C+F++
Sbjct:  538 FDAVVGDIAIVTKRTRIVDFTQPYIESGLVVVAPVTRLNENPWAFLRPFTLPMWAVTASFFVIVGAAIWILEHRINDEFRGPPRRQIITILWFTFSTMFFSHRETTVSTLGRMVLLIWLFVVLIITSSYTASLTSILTVQQLNSPIKGVDTLISSTGRIGFQVGSFAENYMTDELNIASSRLVPLASPEEYANALQNGTVAAIVDERPYIDLFLSDYCKFAI 759          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 7.678e-78
Identity = 148/226 (65.49%), Postives = 170/226 (75.22%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRT----VAAVVDERPYIDLFLSNHCQFSV 684
            FD  VGD+AIVTNRTK VDFTQPY  SGLVVVAP +KLNS AWAFLRPF  LMWA             WILEHR NDEFRGPP++Q VT+LWFSFSTMFFAHRENTVSTLGR              SSYTASLTSILTVQQLSSPIKGI++L   +D +GYQVGSFAE+YL  EL+I +SRLV LG+PE YA AL++      VAA+VDERPY++LFLS++C + +
Sbjct:  537 FDGVVGDVAIVTNRTKIVDFTQPYAASGLVVVAPFKKLNSGAWAFLRPFNRLMWAVTGCCFLFVGIVVWILEHRTNDEFRGPPKRQCVTILWFSFSTMFFAHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLRERDDPIGYQVGSFAESYLRNELNISESRLVPLGTPEAYAKALKDGPSKGGVAAIVDERPYVELFLSSNCAYRI 762          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.269e-72
Identity = 141/227 (62.11%), Postives = 160/227 (70.48%), Query Frame = 1
Query:   16 VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRT----VAAVVDERPYIDLFLSNHCQFSV 684
            V+DA VGDI I+T RTK  DFTQPY+ESGLVVVAPVRKL SSA AFLRPFTP MW              W LEH+ NDEFRGPPR+Q++T  WFSFST+FF+HRE T S LGR              SSYTASLTSILTV QLSSPIKGI+TL T++D +GY  GSF  +YLI EL+I  SRLV L SPEEY  AL +      VAAVVDER YI+LFLSN C+F +
Sbjct:  526 VYDAGVGDITIITERTKMADFTQPYVESGLVVVAPVRKLGSSAMAFLRPFTPQMWLIAAASFLIVGAVIWCLEHKHNDEFRGPPRRQVITTFWFSFSTLFFSHRETTTSNLGRIVLIIWLFVVLIINSSYTASLTSILTVHQLSSPIKGIETLQTNHDPIGYPQGSFVRDYLIHELNIHVSRLVPLRSPEEYDKALRDGPGKGGVAAVVDERAYIELFLSNRCEFGI 752          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR31_ORYSJ (Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.074e-71
Identity = 137/226 (60.62%), Postives = 164/226 (72.57%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALE----NRTVAAVVDERPYIDLFLSNHCQFSV 684
            FDA VGD+ I+TNRTK VDFTQPY+ SGLVV+  V++ NS  WAFL+PFT  MW              W+LEHR+NDEFRGPP KQ++TV WFSFST+FFAHRE+T STLGR              SSYTASLTSILTVQQL+SPI GID+L+TS+  +G+QVGSFAENYL +EL +  SRL ALGSPEEY  AL+       VAA+VDERPYI+LFL  + +F+V
Sbjct:  539 FDAVVGDVTIITNRTKVVDFTQPYVSSGLVVLTSVKRQNSGGWAFLQPFTIKMWTVTGLFFLIIGTVVWMLEHRINDEFRGPPAKQLITVFWFSFSTLFFAHREDTRSTLGRFVIIIWLFVVLIIQSSYTASLTSILTVQQLTSPITGIDSLITSDVPIGFQVGSFAENYLAQELGVAHSRLKALGSPEEYKKALDLGPSKGGVAAIVDERPYIELFLYQNPKFAV 764          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 9.408e-68
Identity = 132/225 (58.67%), Postives = 163/225 (72.44%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRT----VAAVVDERPYIDLFLSN-HCQF 678
            FD AVGDI IVTNRT+ VDFTQP+IESGLVVVAPV++  SS W+FL+PFT  MWA             WILEHR N EFRGPPR+Q++T+ WFSFSTMFF+HRENTVS+LGR              SSYTASLTSILT++QL+S I+GID+L+TSN+ +G Q G+FA NYLI EL+I  SR+V L   E+Y  AL+       VAA+VDE PYI++ L+N +C+F
Sbjct:  564 FDVAVGDITIVTNRTRYVDFTQPFIESGLVVVAPVKEAKSSPWSFLKPFTIEMWAVTGGFFLFVGAMVWILEHRFNQEFRGPPRRQLITIFWFSFSTMFFSHRENTVSSLGRFVLIIWLFVVLIINSSYTASLTSILTIRQLTSRIEGIDSLVTSNEPIGVQDGTFARNYLINELNILPSRIVPLKDEEQYLSALQRGPNAGGVAAIVDELPYIEVLLTNSNCKF 788          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR35_ARATH (Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2)

HSP 1 Score: 256.144 bits (653), Expect = 1.229e-67
Identity = 133/226 (58.85%), Postives = 160/226 (70.80%), Query Frame = 1
Query:   16 VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRT----VAAVVDERPYIDLFLSN-HCQF 678
            +FD AVGD+ I+TNRTK VDFTQP+IESGLVVVAPV+   SS W+FL+PFT  MWA             WILEHR N+EFRGPPR+QI+TV WFSFSTMFF+HRENTVSTLGR              SSYTASLTSILTVQQL+S I+G+DTL+ SN+ +G Q G+FA  +L+ EL+I  SR++ L   EEY  AL+       VAA+VDE PYI   LSN +C+F
Sbjct:  556 IFDVAVGDVTIITNRTKFVDFTQPFIESGLVVVAPVKGAKSSPWSFLKPFTIEMWAVTGALFLFVGAVIWILEHRFNEEFRGPPRRQIITVFWFSFSTMFFSHRENTVSTLGRFVLLVWLFVVLIINSSYTASLTSILTVQQLTSRIEGMDTLIASNEPIGVQDGTFAWKFLVNELNIAPSRIIPLKDEEEYLSALQRGPRGGGVAAIVDELPYIKALLSNSNCKF 781          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 7.732e-54
Identity = 115/228 (50.44%), Postives = 146/228 (64.04%), Query Frame = 1
Query:   16 VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRT-----VAAVVDERPYIDLFLSNHCQFSV 684
            V+DAAVGDIAIV +R+K VDF+QPY  +GLVVV P    N++ W FLRPFT  +W              WILEHR+N++FRGPPR+Q+ T+L FSFST+F  ++E+T+S L R             T+SYTA+LTSILTVQQL S I GID+L  S   +GYQ G+F   YL   L + +SRLV L S EEY  AL+        VAA+VDE PYI+LFL+    F +
Sbjct:  529 VYDAAVGDIAIVPSRSKLVDFSQPYASTGLVVVIPANDDNAT-WIFLRPFTSRLWCVVLVSFLVIAVVIWILEHRINEDFRGPPRRQLSTMLLFSFSTLFKRNQEDTISNLARLVMIVWLFLLMVLTASYTANLTSILTVQQLPSAITGIDSLRASEVPIGYQAGTFTLEYLTYSLGMARSRLVPLDSTEEYEKALKLGPTNWGGVAAIVDELPYIELFLAERTGFKI 755          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR28_ARATH (Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 7.506e-41
Identity = 91/218 (41.74%), Postives = 119/218 (54.59%), Query Frame = 1
Query:   22 DAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVR-KLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSNHC 672
            DA VGD+ I   R+   DFT PY ESG+ ++ PVR   N + W FL+P+   +W              W+ EHR+N +FRGPP  QI T  WFSFSTM FAHRE  VS L R             T SYTA+LTS LTVQ+       +  L+ + D VGYQ G+F +++LI+E     S+L   GS EE    L N +++A  DE  Y+   LS +C
Sbjct:  528 DAVVGDVTITAYRSLYADFTLPYTESGVSMMVPVRDNENKNTWVFLKPWGLDLWVTTACFFVLIGFVVWLFEHRVNTDFRGPPHHQIGTSFWFSFSTMVFAHREKVVSNLARFVVVVWCFVVLVLTQSYTANLTSFLTVQRFQPAAINVKDLIKNGDYVGYQHGAFVKDFLIKE-GFNVSKLKPFGSSEECHALLSNGSISAAFDEVAYLRAILSQYC 744          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR29_ARATH (Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.154e-39
Identity = 91/222 (40.99%), Postives = 122/222 (54.95%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVR-KLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIAL---ENRTVAAVVDERPYIDLFLSNHC 672
            +DA VGDI I  NR+   DFT P+ ESG+ ++ PVR   N   W FL P++  +W              W+ EHR+N +FRGPP+ QI T LWFSFSTM FAHREN VS L R             T SYTASLTS LTVQ L   +  ++ L+ + D VGYQ G+F ++ L+  L   + +L    S ++    L   +++ +AA  DE  Y+   LS  C
Sbjct:  516 WDAVVGDITITANRSLYADFTLPFTESGVSMMVPVRDNENKDTWVFLEPWSLELWVTTGCFFVFIGFVVWLFEHRVNTDFRGPPQYQIGTSLWFSFSTMVFAHRENVVSNLARFVVVVWCFVVLVLTQSYTASLTSFLTVQSLQPTVTNVNDLIKNRDCVGYQGGAFVKDILL-GLGFHEDQLKPFDSAKDADDLLSKGKSKGIAAAFDEVAYLKAILSQSC 736          
The following BLAST results are available for this feature:
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GLR32_ARATH1.069e-8769.74Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH3.218e-8468.92Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
GLR33_ARATH7.678e-7865.49Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR36_ARATH1.269e-7262.11Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR31_ORYSJ1.074e-7160.62Glutamate receptor 3.1 OS=Oryza sativa subsp. japo... [more]
GLR34_ARATH9.408e-6858.67Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR35_ARATH1.229e-6758.85Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=... [more]
GLR37_ARATH7.732e-5450.44Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR28_ARATH7.506e-4141.74Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=... [more]
GLR29_ARATH3.154e-3940.99Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00558 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00558 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623467 ID=BQ623467; Name=BQ623467; organism=Citrus sinensis; type=EST; length=684bp
GATATTATTTTGTAGGTTTTTGATGCTGCAGTGGGTGACATTGCAATCGT
AACGAACCGAACAAAGGCTGTCGATTTCACCCAGCCGTATATAGAGTCGG
GACTGGTTGTGGTGGCCCCTGTCAGGAAGTTGAATTCAAGTGCTTGGGCA
TTCTTGCGGCCCTTTACTCCATTGATGTGGGCAGTCACAGGAGTATTTTT
CCTTGTTGTTGGAACAGTTGTTTGGATCCTTGAACATAGATTAAATGATG
AATTCAGAGGGCCTCCTAGAAAACAGATTGTCACAGTTCTATGGTTTAGC
TTTTCTACTATGTTTTTTGCCCATAGAGAAAATACAGTGAGCACACTTGG
TCGTGTTGTGCTTATCATCTGGCTCTTTGTTGTTCTTATAATTACCTCAA
GCTATACTGCAAGCCTGACATCAATCCTCACAGTGCAACAGCTTTCCTCA
CCCATCAAAGGAATTGATACCTTGATGACGAGTAATGATCGTGTAGGATA
CCAAGTTGGGTCCTTTGCTGAAAACTATCTGATTGAGGAACTCAGCATTC
CAAAATCTAGACTTGTTGCTCTTGGCTCTCCAGAAGAATATGCGATTGCC
CTAGAAAATAGAACTGTTGCAGCTGTCGTCGATGAAAGACCATACATAGA
TCTGTTCCTCTCAAACCATTGCCAGTTTTCAGTT
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