BQ623621

Overview
NameBQ623621
Unique NameBQ623621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4065 contig Csv1_Contig4065:333..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623621 vs. ExPASy Swiss-Prot
Match: TPPC1_RAT (Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 6.272e-11
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 3 
Query:  111 YTTLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 221
            Y+ LYVE+VVKNPL   G  ++SELF + LD YVR++
Sbjct:  101 YSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137

HSP 2 Score: 39.6614 bits (91), Expect = 6.272e-11
Identity = 16/39 (41.03%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:    2 FRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN 118
            F+T+ YKL + E+P+GIK+++ T    G +R+ L +IY+
Sbjct:   64 FQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYS 102
[Close]
BLAST of BQ623621 vs. ExPASy Swiss-Prot
Match: TPPC1_MOUSE (Trafficking protein particle complex subunit 1 OS=Mus musculus GN=Trappc1 PE=1 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 6.272e-11
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 3 
Query:  111 YTTLYVEYVVKNPLYAPGTPIRSELFNTSLDQYVRTI 221
            Y+ LYVE+VVKNPL   G  ++SELF + LD YVR++
Sbjct:  101 YSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSL 137

HSP 2 Score: 39.6614 bits (91), Expect = 6.272e-11
Identity = 16/39 (41.03%), Postives = 28/39 (71.79%), Query Frame = 2 
Query:    2 FRTNTYKLSFMESPSGIKIILVTHPRTGDLRESLKYIYN 118
            F+T+ YKL + E+P+GIK+++ T    G +R+ L +IY+
Sbjct:   64 FQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYS 102
The following BLAST results are available for this feature:
BLAST of BQ623621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TPPC1_RAT6.272e-1156.76Trafficking protein particle complex subunit 1 OS=... [more]
TPPC1_MOUSE6.272e-1156.76Trafficking protein particle complex subunit 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00712 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00712 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623621 ID=BQ623621; Name=BQ623621; organism=Citrus sinensis; type=EST; length=553bp
TTTTCGTACTAATACATACAAACTTAGTTTCATGGAAAGTCCATCTGGAA
TCAAGATTATCTTGGTCACTCATCCCAGGACTGGTGATCTACGTGAGTCC
CTAAAGTACATATACAACCTTGTATGTTGAATATGTTGTCAAGAATCCAT
TATATGCTCCAGGAACTCCTATCAGGAGTGAGCTATTTAATACATCACTT
GATCAGTATGTAAGAACAATTGCATAGATGTTCAAGTCTATACTCATTCT
TGGCCACAAAAGTACAATCTCTTCAGATGGAGGCTTGTTCATCTTCCTCC
TTAGCAGGCATCCAGCTCCAATTAAGAATGTCTTGTGCAGATACGTTCTG
TTAATCAGTGAACTTTGTGCACATTACTTTTCGTAGGGCTTTGTTAGAAA
GAAATGATCTTCGTGTTAGTGGCTTTGATCAATTACATGCTTGCATCTTT
TTAAAAGTACGCACTTCCATTTGTGGTGATTTTGTGTGCATTGCAACTAA
TCTGTTCCGGTGATGAACTTTGGTGCCTCGAAAGTGCCCTGAAATAGTAC
TGA
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