BQ623625

Overview
NameBQ623625
Unique NameBQ623625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623625 vs. ExPASy Swiss-Prot
Match: CL049_MOUSE (UPF0454 protein C12orf49 homolog OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.734e-16
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 2
Query:   59 CKTTVQGRYLLSDDNGYVCDAVSVDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCVSCCVNPAR-TLKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAY 385
            C+ +VQG++LL+D+ GYVC+   +     CC       +++ C GC L + CC +YEYCVSCC+ P++  L E+ LN   +A           F+ C  +CR +S+SV HEN Y
Sbjct:   75 CRNSVQGKHLLTDELGYVCERKDLLANG-CCDVSVPSTKQYCCDGC-LANGCCEAYEYCVSCCLQPSKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTY 186          
BLAST of BQ623625 vs. ExPASy Swiss-Prot
Match: CL049_BOVIN (UPF0454 protein C12orf49 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.420e-15
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 2
Query:   59 CKTTVQGRYLLSDDNGYVCDAVSVDPQSRCCPEK---GEKFSCQGCNLLSQCCNSYEYCVSCCVNP-ARTLKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAY 385
            C+ ++QG++L++D+ GYVC+   +     CC       +++ C GC L S CC++YEYCVSCC+ P  + L E+ LN   +A           F+ C  +CR +S+SV HEN Y
Sbjct:   75 CRNSIQGKHLITDELGYVCERRDLLVNG-CCNVNVPGTKQYCCDGC-LSSGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTY 186          
BLAST of BQ623625 vs. ExPASy Swiss-Prot
Match: CL049_XENLA (UPF0454 protein C12orf49 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.128e-15
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 2
Query:   59 CKTTVQGRYLLSDDNGYVCDAVSVDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCVSCCVNPARTLK-EQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAYLSDF-HHCF 409
            C+ +VQG+ L++DD GY+C+   +     CC       + +SC+ C L + CC+ YE+CVSCC+ P + L+ E+ LN   +A           F+ C  +CR +S+SV HEN Y +    HC+
Sbjct:   75 CRNSVQGKLLVTDDMGYICERKELLANG-CCNINVASTKLYSCETC-LPNGCCSVYEFCVSCCLQPNKQLQLERFLNKAAVAFQNLFQAVEDHFELCLAKCRTSSQSVQHENTYRNPIAKHCY 195          
BLAST of BQ623625 vs. ExPASy Swiss-Prot
Match: CL049_HUMAN (UPF0454 protein C12orf49 OS=Homo sapiens GN=C12orf49 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.049e-14
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 2
Query:   59 CKTTVQGRYLLSDDNGYVCDAVSVDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCVSCCVNP-ARTLKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAY 385
            C+ ++QG++L++D+ GYVC+   +     CC       +++ C GC   + CC++YEYCVSCC+ P  + L E+ LN   +A           F+ C  +CR +S+SV HEN Y
Sbjct:   75 CRNSIQGKHLITDELGYVCERKDLLVNG-CCNVNVPSTKQYCCDGC-WPNGCCSAYEYCVSCCLQPNKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTY 186          
BLAST of BQ623625 vs. ExPASy Swiss-Prot
Match: CL049_CHICK (UPF0454 protein C12orf49 homolog OS=Gallus gallus GN=RCJMB04_18o22 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 2
Query:   59 CKTTVQGRYLLSDDNGYVCDAVSVDPQSRCCP---EKGEKFSCQGCNLLSQCCNSYEYCVSCCVNPART-LKEQVLN-VKIAKPTTAGTYGSVFDFCAGRCRHNSESVVHENAY 385
            C+ +VQG+ L++D+ GY+C+   +     CC       + +SC  C L + CC+ YEYCVSCC+ P++  L E+ LN   +A           F+ C  +CR +S+SV HEN Y
Sbjct:   75 CRNSVQGKLLITDELGYICERKDLLVNG-CCNVNVPSTKLYSCDSC-LPNGCCSVYEYCVSCCLQPSKQHLLERFLNRAAMAFQNLFMAVEDRFELCLAKCRTSSQSVQHENTY 186          
BLAST of BQ623625 vs. ExPASy Swiss-Prot
Match: CL049_DANRE (UPF0454 protein C12orf49 homolog OS=Danio rerio GN=zgc:110063 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.734e-13
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   59 CKTTVQGRYLLSDDNGYVCDAVSVDPQSRCC---PEKGEKFSCQGCNLLSQCCNSYEYCVSCCVNP-ARTLKEQVLNVKIAKPTTAGTYGSV---FDFCAGRCRHNSESVVHENAY 385
            C+ ++QG+ LL+D+ GYVC+   +     CC        ++ C+ C L + CC+ YEYCVSCC+ P  + L E+ LN   A       + +V   F+ C  +CR +S+SV HEN Y
Sbjct:   69 CRNSIQGKSLLTDELGYVCERKDLLVNG-CCNVNAPSSSQYVCKSC-LSNGCCSIYEYCVSCCLQPDKQPLLERFLN--RAAEGFQNLFTAVEDHFELCLAKCRTSSQSVQHENTY 180          
The following BLAST results are available for this feature:
BLAST of BQ623625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CL049_MOUSE3.734e-1638.60UPF0454 protein C12orf49 homolog OS=Mus musculus P... [more]
CL049_BOVIN2.420e-1537.72UPF0454 protein C12orf49 homolog OS=Bos taurus PE=... [more]
CL049_XENLA4.128e-1535.77UPF0454 protein C12orf49 homolog OS=Xenopus laevis... [more]
CL049_HUMAN2.049e-1435.96UPF0454 protein C12orf49 OS=Homo sapiens GN=C12orf... [more]
CL049_CHICK4.564e-1436.84UPF0454 protein C12orf49 homolog OS=Gallus gallus ... [more]
CL049_DANRE1.734e-1337.07UPF0454 protein C12orf49 homolog OS=Danio rerio GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00716 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00716 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623625 ID=BQ623625; Name=BQ623625; organism=Citrus sinensis; type=EST; length=528bp
GTTTCTATCAATAATATCAGCCATCAGGAAAGATATTGGCTTTCAAGAAA
CACCTTTCTGTAAAACTACAGTCCAAGGAAGATATTTATTATCCGATGAT
AACGGATATGTATGTGATGCTGTGTCAGTGGATCCACAATCCCGATGCTG
CCCAGAGAAAGGAGAGAAATTCTCTTGTCAGGGATGCAATCTTCTTTCAC
AGTGCTGCAACTCATATGAATATTGTGTTTCATGCTGTGTTAATCCTGCA
AGAACTCTAAAAGAACAAGTACTGAACGTGAAGATTGCAAAGCCAACAAC
TGCAGGAACATATGGAAGTGTTTTTGATTTCTGTGCTGGGAGGTGTCGTC
ATAATTCTGAGAGTGTGGTTCATGAAAATGCTTATCTTAGTGATTTTCAT
CATTGCTTTTCAATGCCATCAAATGCTTCAGGGGCTGGTGTTACTCAGCT
GGAAGGCAGACTGTCTGGAATTAGTGTTATTATTGGAAGGCAAGGGGAGT
CTTGTGATCAGCCTGTAGTCAAGTGGAC
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