BQ623677

Overview
NameBQ623677
Unique NameBQ623677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:464..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623677 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 6.475e-62
Identity = 109/122 (89.34%), Postives = 119/122 (97.54%), Query Frame = 3 
Query:    3 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 368
            GADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLKVAEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:  129 GADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTP 250
[Close]
BLAST of BQ623677 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 4.197e-61
Identity = 108/122 (88.52%), Postives = 119/122 (97.54%), Query Frame = 3 
Query:    3 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 368
            GADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL LAGTI +GVY PDT+KL+RLK+AEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:  134 GADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTP 255
[Close]
BLAST of BQ623677 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 2.721e-60
Identity = 106/122 (86.89%), Postives = 118/122 (96.72%), Query Frame = 3 
Query:    3 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 368
            GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLK+AEIKH+RLAM+AMLIFYFEAGQGKTP
Sbjct:  129 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTP 250
The following BLAST results are available for this feature:
BLAST of BQ623677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CB4A_SOLLC6.475e-6289.34Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL4.197e-6188.52Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC2.721e-6086.89Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00768 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00768 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623677 ID=BQ623677; Name=BQ623677; organism=Citrus sinensis; type=EST; length=552bp
CTGGAGCAGATCCTGGAGCCATAGCACCCTTCTCCTTCGGCTCACTCCTG
GGAACCCAGCTTCTCCTTATGGGTTGGGTTGAGAGCAAGCGGTGGGTTGA
TTTTTTCAATCCTGAATCTCAATCAGTTGAATGGGCAACACCTTGGTCAA
GAACTGCTGAAAACTTTGCCAATGCGACTGGTGAACAAGGCTACCCTGGT
GGAAAGTTTTTTGATCCCTTATGTTTGGCTGGAACAATTAAGGATGGTGT
CTACATTCCTGACACTGAGAAGCTTGACAGGCTCAAAGTTGCTGAGATTA
AACATGCTAGGCTTGCTATGGTGGCCATGTTGATTTTCTACTTTGAAGCT
GGCCAAGGCAAGACGCCACTTGGGGCTCTTGGTTTGTAAAACATGCTTAT
GTAGATAACTCACTGATTGGTGTTAAAGCGTAATCAATCGGATGTATATG
AGTTCCCTCAATGAGAGTTCAATTTGATGGGGTTAGTTTGGGATTCCAAA
CAAAAAAAAGAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAA
AA
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