BQ624128 | Citrus Genome Database

Overview


Name	BQ624128
Unique Name	BQ624128
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	479

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4098	contig	Csv1_Contig4098:58..536.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of BQ624128 vs. ExPASy Swiss-Prot
Match: RL292_ARATH (60S ribosomal protein L29-2 OS=Arabidopsis thaliana GN=RPL29B PE=2 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 6.967e-18
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 3

Query:   24 MAKSKNHTAHNQSYKAHKNGIKKPKKHRH 110
            MAKSKNHTAHNQS KAHKNGIKKP++HRH
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRH 29

HSP 2 Score: 50.0618 bits (118), Expect = 6.967e-18
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1

Query:   88 RNPRSTDTSSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 204
            + PR    + T+GMDPKFLRNQRYARKHN  +G +A  E
Sbjct:   22 KKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60

[Close]

BLAST of BQ624128 vs. ExPASy Swiss-Prot
Match: RL291_ARATH (60S ribosomal protein L29-1 OS=Arabidopsis thaliana GN=RPL29A PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 6.967e-18
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 3

Query:   24 MAKSKNHTAHNQSYKAHKNGIKKPKKHRH 110
            MAKSKNHTAHNQS KAHKNGIKKP++HRH
Sbjct:    1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRH 29

HSP 2 Score: 50.0618 bits (118), Expect = 6.967e-18
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1

Query:   88 RNPRSTDTSSTKGMDPKFLRNQRYARKHNKSNGGSAEEE 204
            + PR    + T+GMDPKFLRNQRYARKHN   G +A  E
Sbjct:   22 KKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

[Close]

BLAST of BQ624128 vs. ExPASy Swiss-Prot
Match: RL29_PIG (60S ribosomal protein L29 OS=Sus scrofa GN=RPL29 PE=2 SV=4)

HSP 1 Score: 49.6766 bits (117), Expect = 5.245e-13
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 3

Query:   24 MAKSKNHTAHNQSYKAHKNGIKKPKKHRH 110
            MAKSKNHT HNQS K H+NGIKKP+  R+
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRY 29

HSP 2 Score: 45.0542 bits (105), Expect = 5.245e-13
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 1

Query:   88 RNPRSTDTSSTKGMDPKFLRNQRYARKHNK 177
            + PRS    S KG+DPKFLRN R+A+KHNK
Sbjct:   22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

[Close]

BLAST of BQ624128 vs. ExPASy Swiss-Prot
Match: RL29_MOUSE (60S ribosomal protein L29 OS=Mus musculus GN=Rpl29 PE=2 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 5.245e-13
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 3

Query:   24 MAKSKNHTAHNQSYKAHKNGIKKPKKHRH 110
            MAKSKNHT HNQS K H+NGIKKP+  R+
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRY 29

HSP 2 Score: 45.0542 bits (105), Expect = 5.245e-13
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 1

Query:   88 RNPRSTDTSSTKGMDPKFLRNQRYARKHNK 177
            + PRS    S KG+DPKFLRN R+A+KHNK
Sbjct:   22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

[Close]

BLAST of BQ624128 vs. ExPASy Swiss-Prot
Match: RL29_MACFA (60S ribosomal protein L29 OS=Macaca fascicularis GN=RPL29 PE=2 SV=3)

HSP 1 Score: 49.6766 bits (117), Expect = 5.252e-13
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 3

Query:   24 MAKSKNHTAHNQSYKAHKNGIKKPKKHRH 110
            MAKSKNHT HNQS K H+NGIKKP+  R+
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRY 29

HSP 2 Score: 45.0542 bits (105), Expect = 5.252e-13
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 1

Query:   88 RNPRSTDTSSTKGMDPKFLRNQRYARKHNK 177
            + PRS    S KG+DPKFLRN R+A+KHNK
Sbjct:   22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

[Close]

BLAST of BQ624128 vs. ExPASy Swiss-Prot
Match: RL29_HUMAN (60S ribosomal protein L29 OS=Homo sapiens GN=RPL29 PE=1 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 5.252e-13
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 3

Query:   24 MAKSKNHTAHNQSYKAHKNGIKKPKKHRH 110
            MAKSKNHT HNQS K H+NGIKKP+  R+
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRY 29

HSP 2 Score: 45.0542 bits (105), Expect = 5.252e-13
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 1

Query:   88 RNPRSTDTSSTKGMDPKFLRNQRYARKHNK 177
            + PRS    S KG+DPKFLRN R+A+KHNK
Sbjct:   22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

[Close]

BLAST of BQ624128 vs. ExPASy Swiss-Prot
Match: RL29_RAT (60S ribosomal protein L29 OS=Rattus norvegicus GN=Rpl29 PE=1 SV=3)

HSP 1 Score: 49.6766 bits (117), Expect = 5.259e-13
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 3

Query:   24 MAKSKNHTAHNQSYKAHKNGIKKPKKHRH 110
            MAKSKNHT HNQS K H+NGIKKP+  R+
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRY 29

HSP 2 Score: 45.0542 bits (105), Expect = 5.259e-13
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 1

Query:   88 RNPRSTDTSSTKGMDPKFLRNQRYARKHNK 177
            + PRS    S KG+DPKFLRN R+A+KHNK
Sbjct:   22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

[Close]

BLAST of BQ624128 vs. ExPASy Swiss-Prot
Match: RL29_BOVIN (60S ribosomal protein L29 OS=Bos taurus GN=RPL29 PE=2 SV=3)

HSP 1 Score: 49.6766 bits (117), Expect = 5.267e-13
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 3

Query:   24 MAKSKNHTAHNQSYKAHKNGIKKPKKHRH 110
            MAKSKNHT HNQS K H+NGIKKP+  R+
Sbjct:    1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRY 29

HSP 2 Score: 45.0542 bits (105), Expect = 5.267e-13
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 1

Query:   88 RNPRSTDTSSTKGMDPKFLRNQRYARKHNK 177
            + PRS    S KG+DPKFLRN R+A+KHNK
Sbjct:   22 KKPRSQRYESLKGVDPKFLRNMRFAKKHNK 51

The following BLAST results are available for this feature:

BLAST of BQ624128 vs. ExPASy Swiss-Prot

BLAST of BQ624128 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8


Match Name	E-value	Identity	Description
RL292_ARATH	6.967e-18	89.66	60S ribosomal protein L29-2 OS=Arabidopsis thalian...	[more]
RL291_ARATH	6.967e-18	89.66	60S ribosomal protein L29-1 OS=Arabidopsis thalian...	[more]
RL29_PIG	5.245e-13	72.41	60S ribosomal protein L29 OS=Sus scrofa GN=RPL29 P...	[more]
RL29_MOUSE	5.245e-13	72.41	60S ribosomal protein L29 OS=Mus musculus GN=Rpl29...	[more]
RL29_MACFA	5.252e-13	72.41	60S ribosomal protein L29 OS=Macaca fascicularis G...	[more]
RL29_HUMAN	5.252e-13	72.41	60S ribosomal protein L29 OS=Homo sapiens GN=RPL29...	[more]
RL29_RAT	5.259e-13	72.41	60S ribosomal protein L29 OS=Rattus norvegicus GN=...	[more]
RL29_BOVIN	5.267e-13	72.41	60S ribosomal protein L29 OS=Bos taurus GN=RPL29 P...	[more]

Properties


Property Name	Value
Genbank description	USDA-FP_01219 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01219 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ624128 ID=BQ624128; Name=BQ624128; organism=Citrus sinensis; type=EST; length=479bp
GCCCAAACCGATCCTTTTGAAAGATGGCCAAGTCGAAGAATCACACTGCC
CATAACCAGTCTTACAAAGCCCACAAGAATGGAATCAAGAAACCCAAGAA
GCACAGACACATCTTCAACCAAAGGGATGGATCCTAAGTTTCTGAGGAAT
CAGAGGTACGCAAGGAAGCATAACAAGAGTAACGGCGGATCCGCTGAGGA
GGAATAAACGTTAAAGCCAAGTGTCTATTATTTTTATTTTACGAAAGCTG
CTTGTTTAGTCAGCTTTTGTTATGAAATACAATTTTGCTTGTATTGCGAA
CTAAATATGATTTCGTACCTTAGGTTATATTAGTTGTTTGCTCTTTATAA
CAATTGTCTAGGAATGTAGTGCCTTATAGCCTTCTTTGATATCAAGCTGG
AGTTTGCATTTTTTTTTAGGCTTCAATTCACTATGGATGAGGTATTTGCT
GGGTTTGTTTCTAATATGAATGATTCTGT