C21901

Overview
NameC21901
Unique NameC21901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length260
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:151..410. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.803e-28
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MASKR  KELKDLQKDPP SCSAGPVA+DMFHWQATIMGP+DSP+AGGVF VSIHFPPDYPFK
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.016e-28
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MASKR  KELKDLQKDPP SCSAGPVA+DMFHWQATIMGPSDSP++GGVF V+IHFPPDYPFK
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.016e-28
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MASKR  KELKDLQKDPP SCSAGPVA+DMFHWQATIMGPSDSP++GGVF V+IHFPPDYPFK
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.245e-28
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MASKR  KELKDLQKDPP SCSAGPVA+DMFHWQATIMGPS+SP+AGGVF V+IHFPPDYPFK
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.526e-27
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MASKR  KELKDLQKDPP++CSAGPVA+DMFHWQATIMGP +SP+AGGVF VSIHFPPDYPFK
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.993e-27
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MASKR NKEL+DLQ+DPP SCSAGP  DDMF WQATIMGP+DSPFAGGVF V+IHFPPDYPFK
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.603e-27
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MASKR  KELKDLQKDPP SCSAGPVA+DMFHWQATIMGP++SP++GGVF V+IHFPPDYPFK
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.866e-25
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR N+EL DL KDPP+SCSAGPV DD+FHWQATIMGP+DSP+AGGVF +SIHFP DYPFK
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.428e-25
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR NKEL DL +DPP+SCSAGPV +D+FHWQATIMGPSDSP+AGGVF ++IHFP DYPFK
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFK 63          
BLAST of C21901 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.428e-25
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 3
Query:   63 MASKRXNKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFXVSIHFPPDYPFK 251
            MA KR NKEL DL +DPPA CSAGPV DDMFHWQATIMGP+DSP+ GGVF ++IHFP DYPFK
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63          
The following BLAST results are available for this feature:
BLAST of C21901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
UBC4_SOLLC1.803e-2888.89Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC9_ARATH4.016e-2887.30SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH4.016e-2887.30Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH5.245e-2887.30Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC11_ARATH1.526e-2785.71Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC30_ARATH1.993e-2784.13Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC8_ARATH2.603e-2784.13Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC4_SCHPO1.866e-2579.37Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC1_MAGGR5.428e-2577.78Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D3_RAT5.428e-2577.78Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC21901 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSO-3R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21901 ID=C21901; Name=C21901; organism=Citrus sinensis; type=EST; length=260bp
GGCACGAGAAATAACACCAGACCCAAACTNTCAGGCCACAAAGTTTGTTG
AGAAATTCCCAGATGGCTTCAAAACGGNTCAACAAGGAGTTGAAGGACCT
ACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACA
TGTTCCATTGGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCT
GGGGGTGTATTTNTTGTATCCATTCATTTCCCACCTGATTATCCATTCAA
GCACCGAGGC
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