CB250265

Overview
NameCB250265
Unique NameCB250265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Mature fruit abscission zone cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: PAOX_ARTGO (Phenylethylamine oxidase OS=Arthrobacter globiformis PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.880e-28
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 3
Query:    9 RRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVKQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 308
            RRAAF   +LWVT YA DE YP G+F NQ+   G GL +++ Q+R ++  DIV+W+ FG+TH PR+EDWP+MPVD +GF L P GFF+ SP +DVP N S
Sbjct:  532 RRAAFATKDLWVTRYADDERYPTGDFVNQHSG-GAGLPSYIAQDRDIDGQDIVVWHTFGLTHFPRVEDWPIMPVDTVGFKLRPEGFFDRSPVLDVPANPS 630          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMO2_ARTS1 (Copper methylamine oxidase OS=Arthrobacter sp. (strain P1) GN=maoII PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.630e-27
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:    9 RRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVKQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 308
            +RA F ++NLWVT Y   E +  GE+PNQ     +GL  W +++R++ +TD+V+WY FG+ H+ RLEDWPVMP   IGFML PHGFFN +P +++P + S
Sbjct:  534 KRAQFARNNLWVTAYDRTERFAAGEYPNQATGADDGLHIWTQKDRNIVDTDLVVWYTFGMHHVVRLEDWPVMPRQNIGFMLEPHGFFNQNPTLNLPTSTS 633          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMO1_ARTS1 (Primary amine oxidase OS=Arthrobacter sp. (strain P1) GN=maoI PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.630e-27
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 3
Query:    9 RRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVKQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 308
            +RA F ++NLWVT Y   E +  GE+PNQ     +GL  W +++R++ +TD+V+WY FG+ H+ RLEDWPVMP   IGFML PHGFFN +P +++P + S
Sbjct:  534 KRAQFARNNLWVTAYDRTERFAAGEYPNQATGADDGLHIWTQKDRNIVDTDLVVWYTFGMHHVVRLEDWPVMPRQNIGFMLEPHGFFNQNPTLNLPTSTS 633          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMOH_ARTGO (Histamine oxidase OS=Arthrobacter globiformis PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.945e-25
Identity = 50/95 (52.63%), Postives = 70/95 (73.68%), Query Frame = 3
Query:   12 RAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVKQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVP 296
            RAAF +H+LWVT +A +E+Y  G+F NQ+P  G  L  +V Q+R ++  D+V+W+ FG+TH PR EDWP+MPVD  GF L PHGFF+ +P ++VP
Sbjct:  553 RAAFARHHLWVTRHAEEELYAAGDFVNQHPG-GAVLPAYVAQDRDIDGQDLVVWHSFGLTHFPRPEDWPIMPVDTTGFTLKPHGFFDENPTLNVP 646          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMO1_ASPNG (Copper amine oxidase 1 OS=Aspergillus niger GN=AO-I PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.180e-22
Identity = 49/116 (42.24%), Postives = 73/116 (62.93%), Query Frame = 3
Query:    9 RRAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVKQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNESDLDLKDTVIAEKPVQN 356
            RRA F +H++WVT Y   E+Y GG +  Q+    EG++  VK+  S+ +TD+V+W  FG+TH PR+EDWPVMPV+    M+ P  FF  +P++DVP   SD ++   V+     +N
Sbjct:  556 RRAQFAQHHVWVTKYRDGELYAGGRYTLQSQEEIEGVSDAVKRGDSVVDTDVVVWSTFGITHNPRVEDWPVMPVEIFQLMIRPADFFTANPSLDVP---SDKNISSRVVGNDCCRN 668          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMOH2_SCHPO (Putative primary amine oxidase 2 OS=Schizosaccharomyces pombe GN=SPAC2E1P3.04 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.595e-19
Identity = 42/102 (41.18%), Postives = 68/102 (66.67%), Query Frame = 3
Query:   12 RAAFLKHNLWVTPYAHDEMYPGGEF-PNQNPRVGEGLATWVKQ--NRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVDVPPNES 308
            RA F +H++ VTPY   ++YP G++ P  +    +GL  W+ +  + S++ TDIV+W+ FG+TH P  ED+P+MP + I  +L P  FF  +PA+DVPP+++
Sbjct:  564 RAGFARHHIHVTPYKDGQIYPAGDYVPQTSGEPTKGLPEWIAEEPDASVDNTDIVVWHTFGITHFPAPEDFPLMPAEPIRLLLRPRNFFLRNPALDVPPSKN 665          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMO_LENCU (Primary amine oxidase (Fragment) OS=Lens culinaris PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 9.677e-17
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   12 RAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVKQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAV-DVPPNE 305
            R AF  +N+WVTPY   E + GG + + + R  + LA W K+NR +   DIV+W+V G+ H+P  ED+P+MP+    F L P  FF  +P +  +PP +
Sbjct:  562 RGAFTNYNVWVTPYNRTEKWAGGLYVDHS-RGDDTLAVWTKKNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVLKTLPPRD 659          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMOH1_SCHPO (Putative primary amine oxidase 1 OS=Schizosaccharomyces pombe GN=SPBC1289.16c PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.264e-16
Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = 3
Query:   15 AAFLKHNLWVTPYAHDEMYPGGEF-PNQNPRVGEGLATWVKQ--NRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAVD-----------VPPNESDLDLKDT 329
            + F ++N++VTPY  D+++P G++ P  +    +GL+ W+    N  ++ TDIV+W+ FG+ H P  ED+P+MP + I   L P  FF  +PA+D             PN    +L+DT
Sbjct:  542 SGFAENNIYVTPYMDDQIFPTGDYAPQASDDTPKGLSKWISDDPNAQIKNTDIVVWHTFGMIHFPAPEDFPIMPAESIHLFLQPRNFFKHNPALDTSSSVNSTSEATSPNTHHENLRDT 660          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMO_PEA (Primary amine oxidase OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.192e-16
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 3
Query:   12 RAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVKQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAV 287
            R AF  +N+WVT Y   E + GG + + + R  + LA W KQNR +   DIV+W+V G+ H+P  ED+P+MP+    F L P  FF  +P +
Sbjct:  569 RGAFTNYNVWVTAYNRTEKWAGGLYVDHS-RGDDTLAVWTKQNREIVNKDIVMWHVVGIHHVPAQEDFPIMPLLSTSFELRPTNFFERNPVL 659          
BLAST of CB250265 vs. ExPASy Swiss-Prot
Match: AMO_ECOLI (Primary amine oxidase OS=Escherichia coli (strain K12) GN=tynA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.825e-15
Identity = 36/92 (39.13%), Postives = 55/92 (59.78%), Query Frame = 3
Query:   12 RAAFLKHNLWVTPYAHDEMYPGGEFPNQNPRVGEGLATWVKQNRSLEETDIVLWYVFGVTHIPRLEDWPVMPVDRIGFMLMPHGFFNCSPAV 287
            R +F+   LWVT Y   E +P G++PN++     GL  + K N SL+ TD V+W   G TH+ R E+WP+MP + +  +L P  FF+ +P +
Sbjct:  660 RLSFMDKQLWVTRYHPGERFPEGKYPNRSTH-DTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPWNFFDETPTL 750          
The following BLAST results are available for this feature:
BLAST of CB250265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PAOX_ARTGO1.880e-2856.00Phenylethylamine oxidase OS=Arthrobacter globiform... [more]
AMO2_ARTS14.630e-2750.00Copper methylamine oxidase OS=Arthrobacter sp. (st... [more]
AMO1_ARTS14.630e-2750.00Primary amine oxidase OS=Arthrobacter sp. (strain ... [more]
AMOH_ARTGO1.945e-2552.63Histamine oxidase OS=Arthrobacter globiformis PE=1... [more]
AMO1_ASPNG1.180e-2242.24Copper amine oxidase 1 OS=Aspergillus niger GN=AO-... [more]
AMOH2_SCHPO1.595e-1941.18Putative primary amine oxidase 2 OS=Schizosaccharo... [more]
AMO_LENCU9.677e-1740.40Primary amine oxidase (Fragment) OS=Lens culinaris... [more]
AMOH1_SCHPO1.264e-1634.45Putative primary amine oxidase 1 OS=Schizosaccharo... [more]
AMO_PEA8.192e-1641.30Primary amine oxidase OS=Pisum sativum PE=1 SV=1[more]
AMO_ECOLI1.825e-1539.13Primary amine oxidase OS=Escherichia coli (strain ... [more]

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Properties
Property NameValue
Genbank descriptionEST0035 Mature fruit abscission zone cDNA subtraction library Citrus sinensis cDNA clone MFAZ044 similar to peroxisomal copper-containing amine oxidase (acc# AAD40979), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB250265 ID=CB250265; Name=CB250265; organism=Citrus sinensis; type=EST; length=524bp
AATTTTTAAGACGAGCTGCTTTCTTGAAGCATAATCTTTGGGTCACTCCT
TATGCACATGATGAAATGTATCCTGGAGGAGAGTTTCCTAATCAAAATCC
TCGAGTTGGCGAAGGATTGGCTACTTGGGTTAAGCAAAATCGCTCTCTGG
AAGAAACTGACATAGTTCTGTGGTATGTATTTGGAGTGACTCACATTCCT
AGACTGGAAGACTGGCCTGTGATGCCTGTGGATCGCATTGGCTTTATGCT
CATGCCACATGGGTTCTTCAATTGCTCACCAGCAGTGGATGTCCCTCCAA
ATGAAAGCGATTTGGATCTCAAGGACACTGTGATCGCCGAAAAGCCCGTC
CAGAATGGGCTGCTTGCCAAGCTCTGAATGTATATCCGTGGTTGGTTGAG
TTCGTGGCTGCTTGCTTTCTTCTTTTAGTGGGTTGTTTGTTTAAAAATTT
AGGTCTTTGGACAACTTCAGGCAAATAATAATTTTTAATCCAGTAACTAA
AGTACCTGCCCGGGCGGCCGCTCG
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