CB290343

Overview
NameCB290343
Unique NameCB290343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12023 contig Csv1_Contig12023:83..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 3.961e-73
Identity = 126/169 (74.56%), Postives = 138/169 (81.66%), Query Frame = 3
Query:   63 GWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            GW + HATFY              YGNLYS+GYGTNTAALSTALFNNG+SCGACFEI+C ND +WC  GSI VTATNFC  NNALPNNAGGWCN  QQHFDLSQPVF++IAQY+AGIVPV+YRRVPC R+GGIRFTINGHSYFNLVLITNVGG GDV +  +KGSRT W
Sbjct:   26 GWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAMVKGSRTGW 194          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 1.505e-72
Identity = 125/172 (72.67%), Postives = 138/172 (80.23%), Query Frame = 3
Query:   54 YAQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            Y  GW + HATFY              YGNLYS+GYGTNTAALSTALFNNG+SCGACFEIKC +D  WC  G+I VTATNFC  NNALPNNAGGWCN    HFDLSQPVF++IAQYKAG+VPVSYRRVPC R+GGIRFTINGHSYFNLVL+TNVGG GDV +V++KGSRT W
Sbjct:   26 YDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAVKGSRTRW 197          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.079e-70
Identity = 124/188 (65.96%), Postives = 144/188 (76.60%), Query Frame = 3
Query:    6 FXGLMLLGIXYLVXCVYAQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            F  ++++G+       Y  GW + HATFY              YGNLYS+GYGT+TAALSTALFNNG+SCG+CFEI+C ND +WC  GSI VTATNFC  NNAL NN GGWCN   +HFDL+QPVF++IAQY+AGIVPVSYRRVPC R+GGIRFTINGHSYFNLVLITNVGG GDV + +IKGSRT W
Sbjct:    6 FLVMIMVGVMASSVSGYGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHSAAIKGSRTVW 193          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 8.547e-68
Identity = 122/195 (62.56%), Postives = 141/195 (72.31%), Query Frame = 3
Query:    3 EFXGLMLLGIXYLVXCV------YAQGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            EF G M++ +  ++  +      Y+ GW +  ATFY              YGNLYS+GYGTNTAALSTALFN G SCGACF+IKCV+DP+WC  G+I VT TNFC  N A  NNAGGWCN  Q HFDL+QP+F +IAQYKAG+VPV YRRV C RKGGIRFTINGHSYFNLVLITNV G GDV +VSIKG+ T W
Sbjct:    2 EFFGKMIISLSLMMMIMWKSVDGYSSGWVNARATFYGGADASGTMGGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRRVACRRKGGIRFTINGHSYFNLVLITNVAGAGDVISVSIKGTNTRW 196          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 4.690e-66
Identity = 117/176 (66.48%), Postives = 136/176 (77.27%), Query Frame = 3
Query:   51 VYAQG-WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGS--IFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            +Y+ G W + HATFY              YGNLYS+GYGTNTAALSTALFNNGMSCGACFE+KC NDP+WC +GS  I +TATNFC  N A P++ GGWCN  ++HFDL+ PVF +IAQY+AGIVPVSYRRVPC ++GGIRFTINGH YFNLVLITNV G GD+   S+KGSRT W
Sbjct:   25 IYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGW 200          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 3.040e-65
Identity = 115/167 (68.86%), Postives = 130/167 (77.84%), Query Frame = 3
Query:   63 GWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRT 563
            GW   HATFY              YGNLY +GYGTNTAALSTALFNNG++CGAC+E+KC +DPRWC   +I VTATNFC  N  L N+ GGWCN   QHFDL++P F QIAQY+AGIVPVS+RRVPC +KGGIRFTINGHSYFNLVLI+NVGG GDV AVSIKGS+T
Sbjct:   29 GWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKT 195          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 2.845e-63
Identity = 111/170 (65.29%), Postives = 128/170 (75.29%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAG--SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            W   HATFY              YGNLYS+GYGTNTAALST+LFN+G SCGACFEIKCVNDP+WC  G  S+FVTATNFC  N A P++ GGWCN  + HFDL+ PVF +IA+Y+AGIVP+SYRRV C + GGIRFTINGH YFNLVLITNV G GD+   S+KGS+T W
Sbjct:   34 WQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGW 203          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.412e-62
Identity = 113/176 (64.20%), Postives = 131/176 (74.43%), Query Frame = 3
Query:   51 VYAQG-WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAG--SIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            VY+ G W + HATFY              YGNLYS+GYG NTAALSTALFNNG SCGACFEIKC +DPRWC  G  SI VTATNFC  N A P++ GGWCN  ++HFDL+ P+F +I  Y+AGIVPVSYRRVPC + GGIRFT+NG  YFNLVL+TNV G GD+  VS+KGS+TDW
Sbjct:   30 VYSGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDW 205          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 2.409e-62
Identity = 113/194 (58.25%), Postives = 139/194 (71.65%), Query Frame = 3
Query:    3 EFXGLMLLGIXYLVXCVYA------QGWTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTD 566
            E+  ++ L +  L  C+Y+       GW   HATFY              YGNL+S+GYG  TAALSTALFN+G  CGACFE++C +DP WC  GSI V+ATNFC  N AL N+ GGWCN   +HFDL++P F QIAQY+AGIVPV++RRVPC + GGIRFTING+ YF+LVLITNVGG GD+RAVS+KGS+TD
Sbjct:    5 EYSHILFLSLCTLNFCLYSINSDDNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVLITNVGGAGDIRAVSLKGSKTD 198          
BLAST of CB290343 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 4.108e-62
Identity = 108/168 (64.29%), Postives = 126/168 (75.00%), Query Frame = 3
Query:   66 WTDDHATFYXXXXXXXXXXXXXXYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRAGSIFVTATNFCARNNALPNNAGGWCNLHQQHFDLSQPVFEQIAQYKAGIVPVSYRRVPCSRKGGIRFTINGHSYFNLVLITNVGGDGDVRAVSIKGSRTDW 569
            W   HATFY              YGNLYS GYGTNTAALST LFN+G +CG+C+E++C ND +WC  GS+ VTATN C  N ALPN+ GGWCN  + HFD+++P F QI  Y+AGIVPVSYRRVPC +KGGIRFTINGHSYFNLVL+TNV G GDV++VSIKGS T W
Sbjct:   29 WQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGPGDVQSVSIKGSSTGW 196          
The following BLAST results are available for this feature:
BLAST of CB290343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXPA1_ARATH3.961e-7374.56Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP15_ARATH1.505e-7272.67Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP10_ARATH1.079e-7065.96Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP14_ARATH8.547e-6862.56Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA4_ARATH4.690e-6666.48Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA8_ARATH3.040e-6568.86Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP16_ARATH2.845e-6365.29Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA3_ARATH1.412e-6264.20Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA2_ARATH2.409e-6258.25Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXPA2_ORYSJ4.108e-6264.29Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01ah06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ah06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290343 ID=CB290343; Name=CB290343; organism=Citrus sinensis; type=EST; length=569bp
TGGAATTTNTTGGGTTGATGTTGTTGGGGATTNTTTATTTAGTGTNATGT
GTTTATGCCCAAGGATGGACTGATGATCATGCNACTTTTTATGGTGGGGG
TGATGCCTCTGGTACAATGGGTGGCGCTTGTGGGTATGGAAACTTATACA
GCGAGGGATATGGGACAAACACAGCAGCTCTGAGCACTGCACTTTTCAAC
AATGGCATGAGCTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCC
AAGATGGTGCCGTGCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCG
CTCGAAATAATGCTCTCCCAAACAATGCCGGTGGTTGGTGCAATCTTCAC
CAGCAACATTTTGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTA
CAAAGCTGGGATAGTACCTGTGTCTTACAGAAGGGTTCCATGCAGTAGGA
AGGGAGGTATCAGATTCACGATCAACGGCCATTCTTACTTCAACTTAGTC
CTAATCACAAACGTCGGAGGCGATGGTGATGTGCGTGCTGTTTCAATCAA
AGGGTCAAGAACTGATTGG
back to top