CB290672

Overview
NameCB290672
Unique NameCB290672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB290672 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24
Identity = 70/167 (41.92%), Postives = 89/167 (53.29%), Query Frame = -3
Query:  306 SSPVRKPSSFGYDXXXXXXXXXXXXXXXAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWMEQMYIEQEQMV 779
            SSPVR+P   G++               AFAKRS SF                  P   +SN+SDW SP+GKL+WG+Q DELNKL++SASFG   NN  + +     P+    DEPDVSWVNSLVK+  PE      G  + GA   +K +   W EQMYI+ EQ +
Sbjct:  450 SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595          
BLAST of CB290672 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.579e-23
Identity = 76/178 (42.70%), Postives = 93/178 (52.25%), Query Frame = -3
Query:  306 QNMNQLRASYPAANLSSSPVRKP-SSFGYDXXXXXXXXXXXXXXXAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWMEQMYIEQEQMV 827
            QNMNQ    YP     SSPVR+P S  G++               AFAKRS SF                 P T  +  SNLSDW SP+GKL+WG++G+ELNK+++S SFG   NN           +    DEPDVSWVNSLVKD T   +  FG  E+ +   W EQMY E+EQ V
Sbjct:  433 QNMNQ---HYP-----SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF----------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTV 579          
BLAST of CB290672 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.671e-22
Identity = 67/130 (51.54%), Postives = 76/130 (58.46%), Query Frame = -3
Query:  303 FAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 692
            FAKRSQSFIDRG   + A  S++S   T   S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR  +     T       +   EPDVSWVNSLVKD    G              +   + EQEQMVA
Sbjct:  492 FAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKDGHAAGD-------------IFAQWPEQEQMVA 601          
BLAST of CB290672 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18
Identity = 66/163 (40.49%), Postives = 85/163 (52.15%), Query Frame = -3
Query:  303 NLSSSPVRKPSSFGYDXXXXXXXXXXXXXXXAFAK-RSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 788
            +LSSSPV   S F  D                FAK RSQSFI+R       GL+      ++ ++ L+DW S DGKLDW VQGDEL KL+KS SF  R+  + +          + ++EPDVSWV  LVK+  P+       E +    WMEQ Y+E EQ VA
Sbjct:  468 SLSSSPVGANSLFSMDSSAVLASRAAE-----FAKQRSQSFIERNN-----GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQSYMETEQTVA 607          
BLAST of CB290672 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  381 RSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQ 683
            RS S  D G   +RA   +V +P    SS+ S W SP G  DWGV G+EL KL++S+SF  RS                  D+PD+SWV++LVK+  PE Q
Sbjct:  625 RSLSSRDLGPSAARAS-GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG----------------DDPDLSWVHTLVKESPPEKQ 705          
The following BLAST results are available for this feature:
BLAST of CB290672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H29_ARATH3.978e-2441.92Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH2.579e-2342.70Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H33_ORYSJ1.671e-2251.54Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H66_ARATH9.491e-1840.49Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H24_ORYSJ8.604e-1141.58Zinc finger CCCH domain-containing protein 24 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ch06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ch06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290672 ID=CB290672; Name=CB290672; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTGGATTGAAAAAATAGTATTATATTTTGCCTATTTACA
GTGGGAATCATCAAAAGATTACACAATGTAGGGAAAGGGCTTTAGACCTC
TTTCCATGTAAGAGTGTAAAAACAATTAACAAATCTTTCTTTAAGCTAAA
CTATTAATGATATGAGCAGGGCCTCATTTATCCTCACTATCTTCTCTCTT
TTTTAGCTCCTACAACTTTAGCTACAAACGTGGAATCTAACAAGAATTCA
AAGAATATTAATTTGGTCAGAATAAGGTAGGAGCACATAGCTGTTTTCAT
TATGCCACCATCTGCTCCTGTTCTATGTACATTTGCTCCATCCATGGATT
GTATTGCTGCTTCTCCGCACCAAACAATCCCTGTCCTTCTGGCGTAACAT
CTTTCACCAAGGAATTAACCCAGGACACATCTGGCTCATCAACATTCGAT
GATGATGGAGTGAAGCCTTTTGTTGTTGGGGTTGTTAGATTGTTGCTACG
AAACCCGAATGAAGCTGACTTCTTAAGTTTGTTCAGCTCATCTCCTTGAA
CTCCCCAATCCAGTTTCCCATCAGGGGAGCTCCAATCTGATAGATTAGAG
GATCTGATAGTCGGAGGGTTAGAAACCATGCTGAGACCAGCACGACTGGT
CACTGCTCCACGATCAATAAAACTCTGGCTTCGCTTTGCAAAGGCAGAAG
ACCTTGAATTCATCACTGCAGCTGCCACTGCAGCCGAAGAATCATACCCA
AATGATGAAGGTTTTCTCACTGGAGAGGATGAGAGGTTGGCAGCTGGATA
GCTTGCACGAAGTTGGTTCATGTTTTGGCGCA
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