CB290672
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB290672 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.978e-24 Identity = 70/167 (41.92%), Postives = 89/167 (53.29%), Query Frame = -3 Query: 306 SSPVRKPSSFGYDXXXXXXXXXXXXXXXAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWMEQMYIEQEQMV 779 SSPVR+P G++ AFAKRS SF P +SN+SDW SP+GKL+WG+Q DELNKL++SASFG NN + + P+ DEPDVSWVNSLVK+ PE G + GA +K + W EQMYI+ EQ + Sbjct: 450 SSPVRQPPPHGFESSAAMAAAVMNARSSAFAKRSLSF-----------------KPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595
BLAST of CB290672 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.579e-23 Identity = 76/178 (42.70%), Postives = 93/178 (52.25%), Query Frame = -3 Query: 306 QNMNQLRASYPAANLSSSPVRKP-SSFGYDXXXXXXXXXXXXXXXAFAKRSQSFIDRGAVTSRAGLSMVSNPPTIRS--SNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWMEQMYIEQEQMV 827 QNMNQ YP SSPVR+P S G++ AFAKRS SF P T + SNLSDW SP+GKL+WG++G+ELNK+++S SFG NN + DEPDVSWVNSLVKD T + FG E+ + W EQMY E+EQ V Sbjct: 433 QNMNQ---HYP-----SSPVRQPPSQHGFESSAAAAVAVMKARSTAFAKRSLSF----------------KPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTV 579
BLAST of CB290672 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.671e-22 Identity = 67/130 (51.54%), Postives = 76/130 (58.46%), Query Frame = -3 Query: 303 FAKRSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 692 FAKRSQSFIDRG + A S++S T S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR + T + EPDVSWVNSLVKD G + + EQEQMVA Sbjct: 492 FAKRSQSFIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKDGHAAGD-------------IFAQWPEQEQMVA 601
BLAST of CB290672 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18 Identity = 66/163 (40.49%), Postives = 85/163 (52.15%), Query Frame = -3 Query: 303 NLSSSPVRKPSSFGYDXXXXXXXXXXXXXXXAFAK-RSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 788 +LSSSPV S F D FAK RSQSFI+R GL+ ++ ++ L+DW S DGKLDW VQGDEL KL+KS SF R+ + + + ++EPDVSWV LVK+ P+ E + WMEQ Y+E EQ VA Sbjct: 468 SLSSSPVGANSLFSMDSSAVLASRAAE-----FAKQRSQSFIERNN-----GLNHHPAISSMTTTCLNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQSYMETEQTVA 607
BLAST of CB290672 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11 Identity = 42/101 (41.58%), Postives = 55/101 (54.46%), Query Frame = -3 Query: 381 RSQSFIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQ 683 RS S D G +RA +V +P SS+ S W SP G DWGV G+EL KL++S+SF RS D+PD+SWV++LVK+ PE Q Sbjct: 625 RSLSSRDLGPSAARAS-GVVGSP---LSSSWSKWGSPSGTPDWGVNGEELGKLRRSSSFELRSGG----------------DDPDLSWVHTLVKESPPEKQ 705 The following BLAST results are available for this feature:
BLAST of CB290672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CB290672 ID=CB290672; Name=CB290672; organism=Citrus sinensis; type=EST; length=832bpback to top |