CB290723

Overview
NameCB290723
Unique NameCB290723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:606..1337. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB290723 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 9.342e-40
Identity = 68/110 (61.82%), Postives = 80/110 (72.73%), Query Frame = -1
Query:  389 GIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 718
            GIA+E SY                     P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  335 GIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CB290723 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.594e-39
Identity = 66/117 (56.41%), Postives = 83/117 (70.94%), Query Frame = -1
Query:  368 GIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 718
            GIA+E SY                     P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  343 GIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CB290723 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.928e-35
Identity = 66/125 (52.80%), Postives = 78/125 (62.40%), Query Frame = -1
Query:  365 SRASG--GIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 733
            S +SG  G+A+E SY                     P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  217 SSSSGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CB290723 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.330e-29
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = -1
Query:  392 VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 625
            VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  385 VCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CB290723 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.312e-22
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = -1
Query:  389 CDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 622
            CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  395 CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of CB290723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ORYA_ORYSJ9.342e-4061.82Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.594e-3956.41Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC6.928e-3552.80Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ3.330e-2964.10Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ2.312e-2248.78Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_01db10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01db10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290723 ID=CB290723; Name=CB290723; organism=Citrus sinensis; type=EST; length=733bp
TTTTTTTTTTTTTTTTTATTCAATGTTCGTGATTAAGAAGAATCAATAAA
ATCAATTCATAAAAGCCTCCGCTGAATGATGCCCCTTATATGGTGGAGGA
CATTGGAAATAGATAACAACAATTTGTTTGTGCATTGTTCGGATTCAACG
CAGATACATAACTTACAACGCTATATACAAAACCAACGTCCGAATAAATA
TTTAACAGACCATCCACCTGCCGGTACATTAACGTTTGAAATGAAATGCA
GTAAAATGAACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAATATCT
TCATCCTCCCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATAATTAA
GCACTGCTACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAGCAGG
GGTGCGTCGCAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAAGC
AGGTCCCAGCACGAACATTACAGATGGGATAGTCATGTGGGCAGCAGCTA
TAGTGGTCATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCATGC
AAAGCAAGAGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTCAG
GGCAAGAGTAATAATTGTCACACACAGCAGGAGGCTTTGTTGGAGATGGA
GGAGACGGTCCGGGGTTGGGAGGATTTTGGCCTTTCTTTATGGGATATGA
GGCCTCCATGGCAATTCCACCACTTGCCCGTGA
back to top