CB291077

Overview
NameCB291077
Unique NameCB291077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2092 contig Csv1_Contig2092:1123..2019. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB291077 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.850e-45
Identity = 85/107 (79.44%), Postives = 96/107 (89.72%), Query Frame = -2
Query:  576 RYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 896
            RY LKN  TGEIVIKHL ++QE NQ+NF D+ T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE S DGE+Y+DS+
Sbjct:  330 RYELKNNTTGEIVIKHLGKDQENNQSNFHDAETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDMRTFDELS-DGEVYEDSD 435          
BLAST of CB291077 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.792e-42
Identity = 80/107 (74.77%), Postives = 95/107 (88.79%), Query Frame = -2
Query:  576 RYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 896
            RY LKN+ TGE+V+KH  ++QE++ +NF DS T+AELEVQEK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE SD  E+Y+DS+
Sbjct:  329 RYELKNSTTGEMVVKHFGKDQESDTSNFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDMRTFDELSDT-EVYEDSD 434          
BLAST of CB291077 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.434e-38
Identity = 77/105 (73.33%), Postives = 87/105 (82.86%), Query Frame = -2
Query:  582 RYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 896
            RYV+KN+ TGE VIKHLN+EQE N  NF+ + +   L+V+EK SLLEW ANEYRRFGC LEFVTNKSQEGSQFCRGFGGIGGILRYQLDM +FD  S+DGE  DD
Sbjct:  331 RYVMKNSATGETVIKHLNKEQEANTENFKVADSDLALDVEEKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDMTAFD--SEDGEALDD 433          
BLAST of CB291077 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.382e-27
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = -2
Query:  582 RYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 896
            RYVLKN  T E  I  L  +QE ++ +F D  T  E+E+ E  SLLEWFAN Y++FG TLE VT++SQEGSQF +GFGGIGG+LRY++D +  +   DD ++YDD
Sbjct:  330 RYVLKNHTTDEEKILFLKPDQEKDKTHFTDKDTGVEMEMVESCSLLEWFANNYKKFGSTLEIVTDRSQEGSQFVKGFGGIGGMLRYRIDFQGMEFNDDDPDLYDD 434          
BLAST of CB291077 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.539e-24
Identity = 53/108 (49.07%), Postives = 77/108 (71.30%), Query Frame = -2
Query:  576 RYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSD-DGEIYDDSE 896
            RY+L+   TGE  +  LN++Q  + + F+D  +  + E+ E+  ++EWFAN Y+ FG +LEFVTNKSQEGSQFC+GFGG+GG+LRYQ+D    ++F + D   YDDS+
Sbjct:  332 RYLLR-LPTGEEKVIFLNKDQNKDASVFKDKESGLDYEIVEEMPIVEWFANNYKNFGASLEFVTNKSQEGSQFCKGFGGLGGLLRYQVDFAQLNDFDNPDENEYDDSD 438          
BLAST of CB291077 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.429e-24
Identity = 57/108 (52.78%), Postives = 72/108 (66.67%), Query Frame = -2
Query:  582 RYVLKNTVTG-EIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRS--FDEFSDDGEIYDD 896
            RYVLKN        + HL  EQE ++++F D  +  E+E+ E   LLEW AN Y+ FG TLE +T+KSQEGSQF RGFGGIGGILRY++D +S   DE  +DG   DD
Sbjct:  330 RYVLKNHANSTSTTVLHLTPEQEKDKSHFTDKESGVEMELIESQPLLEWLANNYKMFGATLEIITDKSQEGSQFVRGFGGIGGILRYKVDFQSMQLDELDNDGFDLDD 437          
BLAST of CB291077 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 2.223e-23
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = -2
Query:  585 RYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 896
            RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  330 RYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CB291077 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 2.223e-23
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = -2
Query:  585 RYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 896
            RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  330 RYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CB291077 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 2.223e-23
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = -2
Query:  585 RYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 896
            RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  330 RYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CB291077 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 109.768 bits (273), Expect = 2.223e-23
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = -2
Query:  585 RYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 896
            RYVL    T E  I +L  EQE ++++F D  T  E E+ E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  330 RYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
The following BLAST results are available for this feature:
BLAST of CB291077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ERF1Z_ARATH7.850e-4579.44Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH2.792e-4274.77Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH1.434e-3873.33Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI7.382e-2754.29Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI1.539e-2449.07Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME3.429e-2452.78Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT2.223e-2352.88Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT2.223e-2352.88Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB2.223e-2352.88Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MOUSE2.223e-2352.88Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02bc11_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02bc11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB291077 ID=CB291077; Name=CB291077; organism=Citrus sinensis; type=EST; length=897bp
TTTTTTTTTTTTTAACAAACAGTATCACTTTATTATTATAGCAAGCCATG
GCCTACCAAAGATGGAGATCTAACAAGCATGTTTAAACAACATAACCTTA
AACAAATAACCCAGTCCGATAGACAACAGGAGATCCATCACACTAATTAA
CATGCATTGTACAAACAATAGAACCATAAAAAGATAAACCCAAGTCTGAG
AGAACAGTTTCAATCCACAAGCCCCTAGGGCTTGCCATGGGAGAGATCCC
CATATCCATCATCTGAATGCGAGGTATTCGTAAGGTCCTCTCCAACATTA
GCTAGTAGCTTTGCATAATTCCTCCCTTCTGGAGCTAGTAGCTTTGCATA
ATTCCTCCCTTCTGGATCATACCCAGCAGCGCCATTACAAAGCCCATATA
ACAGAATCATAGATAGCTTGCTCAGCTAAGACACGACATAAACGTACCTC
AGCAGCAACTTGGGAACATTTTGGAACATAGGTACTCCAAAGTTGGCGCG
ACGAATCGCGCGCTGGTGCAGGCCCTTCACGTCGTCATCCTGCACCAGCA
ATGGGGTAGGTTTGATTGATTGCTATTCAGAATCATCATAAATTTCTCCA
TCATCAGAAAACTCATCAAATGATCTCATATCAAGCTGGTAGCGGAGTAT
TCCACCAATACCACCAAAGCCTCTGCAAAACTGGGATCCCTCTTGTGATT
TGTTGGTAACAAACTCGAGTGTGCAACCAAACCTCCTGTATTCATTTGCA
AACCACTCAAGCAGCGATGACTTTTCCTGAACCTCCAATTCAGCAGAGGT
GGCAGAATCACGAAAGTTGTTCTGATTGGTCTCTTGCTCCCTGTTCAAAT
GTTTTATGACAATCTCACCAGTAACAGTATTTTTCAAGACATACCTA
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