CB292891

Overview
NameCB292891
Unique NameCB292891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB292891 vs. ExPASy Swiss-Prot
Match: RT11_MARPO (Ribosomal protein S11, mitochondrial OS=Marchantia polymorpha GN=RPS11 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.404e-14
Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = -2
Query:  198 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 575
            N++      +I+    NT +T+TD  GN K  +SSG +   KG  + + YAA+ATAE+  R+A  +G K V VR+KG  Y   K  ++   + G         I  I D T  PHNGCR PKKRR+
Sbjct:    9 NMQKKHCITYIQSTFGNTIITLTDYNGNTKTWSSSGSVG-FKGSRRSTNYAAQATAENAARVAIQLGFKFVEVRIKGLGY--GKESSLRGLKLGGL------IITKIRDVTPTPHNGCRPPKKRRV 125          
BLAST of CB292891 vs. ExPASy Swiss-Prot
Match: RS11_CHRVO (30S ribosomal protein S11 OS=Chromobacterium violaceum GN=rpsK PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 49/123 (39.84%), Postives = 67/123 (54.47%), Query Frame = -2
Query:  198 SSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 563
            S   VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AEH G++A+  G+K++ VR+KG      +  A+ +    GF        I  I D T  PHNGCR PKKRRI
Sbjct:   19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEHAGKVAQEYGVKNLEVRIKG--PGPGRESAVRALNSLGF-------KITSISDVTPVPHNGCRPPKKRRI 131          
BLAST of CB292891 vs. ExPASy Swiss-Prot
Match: RT11_PROWI (Ribosomal protein S11, mitochondrial OS=Prototheca wickerhamii GN=RPS11 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.102e-14
Identity = 49/131 (37.40%), Postives = 70/131 (53.44%), Query Frame = -2
Query:  198 QFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 590
            Q  R  +E  S  VHI+   NNT +T+TD +GN +   S+G L   K   K + YA+ A AE +   A N G ++++V++KG  Y KK   AI   +      +    I  I++ T   HNGCR PKKRR+
Sbjct:    7 QISRKFIEKKSGIVHIQSTTNNTLITLTDLEGNTQFFVSAGTL-GFKNSRKSTVYASGAAAEALASKAFNEGYRTIIVKIKGLGYGKK--SAIRGLQ------KSNLVIKQIQEVTPIAHNGCRPPKKRRV 128          
BLAST of CB292891 vs. ExPASy Swiss-Prot
Match: RS11_CLOPS (30S ribosomal protein S11 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 53/128 (41.41%), Postives = 69/128 (53.91%), Query Frame = -2
Query:  198 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 581
            R NVEH +   HI+   NN+ VT+TD+KGN    AS+G L   KG  K + +AA+  AE   + A   GLKSV V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   15 RKNVEHGA--AHIQSTFNNSIVTLTDAKGNALAWASAGGLG-FKGSRKSTPFAAQMAAETAAKAAMEHGLKSVEVYVKGPG--AGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 131          
BLAST of CB292891 vs. ExPASy Swiss-Prot
Match: RS11_CLOPE (30S ribosomal protein S11 OS=Clostridium perfringens GN=rpsK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 53/128 (41.41%), Postives = 69/128 (53.91%), Query Frame = -2
Query:  198 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 581
            R NVEH +   HI+   NN+ VT+TD+KGN    AS+G L   KG  K + +AA+  AE   + A   GLKSV V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   15 RKNVEHGA--AHIQSTFNNSIVTLTDAKGNALAWASAGGLG-FKGSRKSTPFAAQMAAETAAKAAMEHGLKSVEVYVKGPG--AGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 131          
BLAST of CB292891 vs. ExPASy Swiss-Prot
Match: RS11_CLOP1 (30S ribosomal protein S11 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsK PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.028e-13
Identity = 53/128 (41.41%), Postives = 69/128 (53.91%), Query Frame = -2
Query:  198 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 581
            R NVEH +   HI+   NN+ VT+TD+KGN    AS+G L   KG  K + +AA+  AE   + A   GLKSV V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   15 RKNVEHGA--AHIQSTFNNSIVTLTDAKGNALAWASAGGLG-FKGSRKSTPFAAQMAAETAAKAAMEHGLKSVEVYVKGPG--AGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 131          
BLAST of CB292891 vs. ExPASy Swiss-Prot
Match: RS11_CLOBL (30S ribosomal protein S11 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rpsK PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = -2
Query:  198 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 581
            R NVEH     HIK   NN+ VT+TDS GN    AS+G L   +G  K + +AA+  AE   ++A   GLKS+ V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKVAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132          
BLAST of CB292891 vs. ExPASy Swiss-Prot
Match: RS11_CLOBJ (30S ribosomal protein S11 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rpsK PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.459e-13
Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = -2
Query:  198 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 581
            R NVEH     HIK   NN+ VT+TDS GN    AS+G L   +G  K + +AA+  AE   ++A   GLKS+ V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKVAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132          
BLAST of CB292891 vs. ExPASy Swiss-Prot
Match: RS11_HYPNA (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.517e-13
Identity = 46/122 (37.70%), Postives = 67/122 (54.92%), Query Frame = -2
Query:  198 SSEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 563
            +S  VH+    NNT VT+TD++GN    +SSG +   KG  K + YAA+  AE   + A+  GL++V VRV+G      +  A+ + +           +  I DTT  PHNGCR PK+RR+
Sbjct:   17 TSGIVHVNSSFNNTMVTITDAQGNTISWSSSGVM-NFKGSRKSTPYAAQMAAEDAAKKAKEHGLQTVEVRVRGPG--SGRESALRALQAAGLT------VTAINDTTPIPHNGCRPPKRRRV 129          
BLAST of CB292891 vs. ExPASy Swiss-Prot
Match: RS11_RALME (30S ribosomal protein S11 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rpsK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.900e-13
Identity = 50/140 (35.71%), Postives = 74/140 (52.86%), Query Frame = -2
Query:  198 GPSQFGQFPRYNVEHS--SEFVHIKLMRNNTFVTVTDSKGNKKIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 608
            GP+   Q  R  V+ +      H+    NNT +T+TD +GN    A++G     KG  K + +AA+  AE+ GR+A++ G+K++ VR+KG      +  A+ +    G         I  IED T  PHNGCR PK+RRI
Sbjct:    4 GPNNAAQRARKKVKKNVADGIAHVHASFNNTIITITDRQGNALSWATAGG-QGFKGSRKSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNALGI-------KIAVIEDVTPVPHNGCRPPKRRRI 133          
The following BLAST results are available for this feature:
BLAST of CB292891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RT11_MARPO1.404e-1438.89Ribosomal protein S11, mitochondrial OS=Marchantia... [more]
RS11_CHRVO6.969e-1439.8430S ribosomal protein S11 OS=Chromobacterium viola... [more]
RT11_PROWI9.102e-1437.40Ribosomal protein S11, mitochondrial OS=Prototheca... [more]
RS11_CLOPS2.028e-1341.4130S ribosomal protein S11 OS=Clostridium perfringe... [more]
RS11_CLOPE2.028e-1341.4130S ribosomal protein S11 OS=Clostridium perfringe... [more]
RS11_CLOP12.028e-1341.4130S ribosomal protein S11 OS=Clostridium perfringe... [more]
RS11_CLOBL3.459e-1340.6330S ribosomal protein S11 OS=Clostridium botulinum... [more]
RS11_CLOBJ3.459e-1340.6330S ribosomal protein S11 OS=Clostridium botulinum... [more]
RS11_HYPNA4.517e-1337.7030S ribosomal protein S11 OS=Hyphomonas neptunium ... [more]
RS11_RALME5.900e-1335.7130S ribosomal protein S11 OS=Ralstonia metallidura... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ah06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ah06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB292891 ID=CB292891; Name=CB292891; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTTTTTTTTTTATATAATCATTACCTACATTCGCACACCCTTAAAC
AAGATTATGAATTCAGATAATCATCTATAAACCCTTAGTAAAAAGCAAAC
TGGGTAATGTCAAAGCTGGCTAGCAATTATTCAGATAATCATCAATAAAA
GTTCCTTTCTATGGTGAAAAATATCAAAACTGGCTAGCCATTATTTAAAT
ACGGCGTTTCTTTGGGAGTCGGCACCCATTGTGCGGGCGACGAGTTGTGT
CTTCAATATATACAATAGGATTCTGATCTCGAGAATTAGCAAATCCCTCT
CTGAAGCTCATGATTGCTTGCCTTTTCTTCTTAAAGTAAGTGAACCCTTT
CACCCTCACTACTACAGATTTTAAACCCATGTTCCTTGCCAGACGCCCAA
CATGTTCTGCAGTTGCTTCGGCAGCATAACGAGACATTTTTGGCCCCCCT
TTCAGTTCAGGCAAACATCCAGAAGAGGCTCCAATCTTTTTATTTCCTTT
AGAATCCGTCACAGTAACAAAGGTGTTATTACGCATCAGCTTTATGTGGA
CAAACTCGGAACTGTGCTCAACATTATAGCGAGGAAATTGACCAAATTGA
GAAGGTCCCGTGAATCTCTTTTCATCTTCCTCTACTATTCCCCTCACAAA
GTCCATGGGCCTGGAACGCCTTCCTGTTTCATCATCCCCCCGGCCTGTGG
AATGAATGAAATTCCTGAAACCTAAAGCATATGGAGCAGAAACATTTTGT
TCCACACTCACTGCACATAAATTCATACCCAAATTGCCCAAAACTCGCGG
CAAACTTCTGCCACTCTCCCCTCTTGCAATATTCCACGAAGAACAAAAAT
GACGTTTCTCATTCTTTAAATAACCTGCAAAA
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