CB293164

Overview
NameCB293164
Unique NameCB293164
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13740 contig Csv1_Contig13740:10..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293164 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 8.419e-51
Identity = 97/124 (78.23%), Postives = 108/124 (87.10%), Query Frame = 1
Query:  232 GVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKGVKEVTGAKLEHLVFAIDAVRSG 603
            G   VR SLE    TVG+VTEV+KDTFWPIVKAAGDK VVLDMYTQWCGPCKVIAPK++EL++KY D++FLKLDCNQ+NK LAKELGIRVVPTFKILKDNK VKEVTGAK E L+ AI+A RSG
Sbjct:   62 GSCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIEAARSG 185          
BLAST of CB293164 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.457e-50
Identity = 98/122 (80.33%), Postives = 110/122 (90.16%), Query Frame = 1
Query:  241 TVRSSLEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKGVKEVTGAKLEHLVFAIDAVRS 600
            +VRSSLE AG   TVG+VTEVNKDTFWPIV AAGDKTVVLDM+T+WCGPCKVIAP ++EL++KY DV+FLKLDCNQ+NKSLAKELGI+VVPTFKILKDNK VKEVTGAK + LV AID VRS
Sbjct:   60 SVRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAIDTVRS 181          
BLAST of CB293164 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.311e-47
Identity = 91/124 (73.39%), Postives = 104/124 (83.87%), Query Frame = 1
Query:  229 GGVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKGVKEVTGAKLEHLVFAIDAVRS 600
            G    VR SLE    +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQWCGPCKVIAPK++ L++KY DV+FLKLDCN +N+ LAKELGIRVVPTFKILKDNK VKEVTGAK + LV AI+  RS
Sbjct:   51 GDSSVVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARS 174          
BLAST of CB293164 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.632e-47
Identity = 90/124 (72.58%), Postives = 104/124 (83.87%), Query Frame = 1
Query:  229 GGVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKGVKEVTGAKLEHLVFAIDAVRS 600
            G    VR SL+    +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQWCGPCKVIAPK++ L++KY DV+FLKLDCN EN+ LAKELGIRVVPTFKILKDN+ VKEVTGAK + LV AI+  RS
Sbjct:   54 GDSSVVRCSLQTVNVSVGQVTEVDKDTFWPIVKAAGEKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARS 177          
BLAST of CB293164 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.154e-46
Identity = 94/138 (68.12%), Postives = 112/138 (81.16%), Query Frame = 1
Query:  205 KKSNKQLNGGVFTVRSSLEIAGAT------VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKGVKEVTGAKLEHLVFAIDAVRS 600
            +K  +++ GG   VR+S+E A  T      VG+VTEVNKDTFWPIVKAAGDK VVLDM+TQWCGPCK +APK+++LA++Y DVIFLKLDCNQENK+LAKELGIRVVPTFKILK+N  V EVTGAK + L+ AI A RS
Sbjct:   54 RKDRRRMRGG--EVRASMEQALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 189          
BLAST of CB293164 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.474e-44
Identity = 93/132 (70.45%), Postives = 106/132 (80.30%), Query Frame = 1
Query:  220 QLNGGVFTVRSSLEIA-GAT----VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKGVKEVTGAKLEHLVFAIDAVRS 600
            +++G    V++SLE A GA     VG+VTEV+KDTFWPI   AGDK VVLDMYTQWCGPCKV+APK+QELA+K  DV+FLKLDCNQENK LAKELGIRVVPTFKILK  K V EVTGAK + LV AI+A RS
Sbjct:   59 RMSGRSCCVKASLETAVGAESETLVGKVTEVDKDTFWPIANGAGDKPVVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAIEAARS 190          
BLAST of CB293164 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.148e-15
Identity = 41/97 (42.27%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  298 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKGVKEVTGAKLEHLVFAID 588
            +KD F   + AAGDK VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKDAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of CB293164 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.699e-15
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  298 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKGVKEVTGAKLEHLVFAID 588
            +K  F   + AAGDK VV+D    WCGPCK+I P F  L++KYS+VIFL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD-DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of CB293164 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 37/97 (38.14%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  298 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKGVKEVTGAKLEHLVFAID 588
            +K  F  ++ +AGDK VV+D    WCGPCK+I P F  L++K+++V+F+++D + + K +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKSAFQEVLDSAGDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVD-DCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of CB293164 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  337 DKTVVLDMYTQWCGPCKVIAPKFQELAKKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKGVKEVTGAKLEHLVFAIDA 591
            DK VV+D +  WCGPCK IAPKF++ +  YSD  F+K+D +Q ++ +A E G+  +P+F + K+ + ++E+ GA    L  +I A
Sbjct:   18 DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSE-IAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKA 101          
The following BLAST results are available for this feature:
BLAST of CB293164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
TRXF2_ARATH8.419e-5178.23Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
TRXF_PEA5.457e-5080.33Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
TRXF1_ARATH3.311e-4773.39Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TRXF_BRANA9.632e-4772.58Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
TRXF_SPIOL8.154e-4668.12Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF_MESCR4.474e-4470.45Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_CALJA1.148e-1542.27Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_HUMAN5.699e-1542.27Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_RABIT2.166e-1438.14Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
TRX1_SCHPO2.829e-1441.18Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05cf09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cf09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293164 ID=CB293164; Name=CB293164; organism=Citrus sinensis; type=EST; length=702bp
GCCCTATTGATATTTTTGTTACTTCACTCTCCACCACAAAAATCACAAAT
GTCTTTACTCCAATTCTCCTCCACCACGGTCCGATCTCCGACGTCGGTAC
CGTGCTCCGGGAATCACCAGATCACAGCCTCTGCTTTCTCAGCGGGAGTC
TCAAGCTCAAGAACCGGCTCTTACTCCTCGTCATTAGTAGCGAAGAAGGC
GAATAAGAAGAGCAATAAGCAGCTAAACGGCGGTGTTTTCACGGTGAGAT
CGAGCTTGGAGATTGCGGGGGCCACAGTGGGAGAGGTCACTGAAGTAAAT
AAGGATACTTTTTGGCCCATCGTTAAGGCCGCCGGTGATAAGACTGTTGT
TCTTGATATGTACACTCAATGGTGTGGTCCTTGTAAAGTGATAGCTCCAA
AATTTCAAGAATTAGCCAAAAAGTACTCCGATGTTATATTTCTAAAGCTT
GATTGCAACCAAGAGAACAAGTCATTGGCGAAAGAGCTTGGAATAAGGGT
TGTTCCTACTTTCAAGATTCTGAAAGACAATAAGGGTGTAAAGGAAGTGA
CGGGGGCCAAATTGGAACACCTAGTTTTCGCCATTGATGCTGTTAGATCC
GGCTGAAAATTCTTTCCTATTATTTCTCCTGTACACTATAAGCAATATGA
TCAGCAATGTGTACGTGCTTGATAATAATTGATTGTTCCACTTGTATGTA
TT
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